Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR548B-201ENST00000385247 97 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 RN7SKP284-201ENST00000411002 343 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-130P-201ENST00000411112 103 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 AC008155.2-201ENST00000464337 397 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 RN7SL542P-201ENST00000467147 294 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 AC010655.3-201ENST00000478818 450 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-397P-201ENST00000516226 104 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 SNORA9.3-201ENST00000516383 129 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 SNORA40.15-201ENST00000516884 107 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 IGLV3-17-201ENST00000519099 244 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 MIR4276-201ENST00000584832 70 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 Y_RNA.183-201ENST00000363882 113 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 RNA5SP387-201ENST00000364226 106 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 Y_RNA.230-201ENST00000364348 109 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-1235P-201ENST00000384559 107 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 MIR1262-201ENST00000408276 93 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 AL357134.1-201ENST00000445848 426 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 Z75741.1-201ENST00000446793 314 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 NDUFAF4P3-201ENST00000456468 525 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-498P-201ENST00000459468 107 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 AC010531.2-201ENST00000465012 153 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 RN7SL20P-201ENST00000488827 297 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 MRPS35P2-201ENST00000508242 191 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 RNA5SP137-201ENST00000516833 135 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-897P-201ENST00000517135 105 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 MIR6798-201ENST00000612887 67 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 snoZ196.1-201ENST00000625269 89 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 MIR3674-201ENST00000636576 68 ntBASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC28AQ8IWP9 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-626P-201ENST00000363354 107 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-418P-201ENST00000384035 107 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-20P-201ENST00000384106 107 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 Y_RNA.462-201ENST00000384268 102 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 MIR1185-2-201ENST00000408687 86 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 RNU6ATAC34P-201ENST00000408879 121 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 RNA5SP475-201ENST00000410568 110 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 AC139712.2-201ENST00000424302 339 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 MTCO1P44-201ENST00000441935 243 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 AC110794.1-201ENST00000505816 425 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 AC087441.2-201ENST00000529141 262 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 MIR2682-201ENST00000580305 110 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 AC005176.2-201ENST00000596933 147 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 AL031274.2-201ENST00000599419 203 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 AL109918.3-201ENST00000603072 338 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 AL161756.2-201ENST00000604597 246 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 AC073657.2-201ENST00000605661 303 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 AC090115.4-201ENST00000609970 188 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 LINC02555-201ENST00000563933 1951 ntBASIC2.41□□□□□ -2.02
CCDC28AQ8IWP9 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.4□□□□□ -2.02
CCDC28AQ8IWP9 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
CCDC28AQ8IWP9 Y_RNA.143-201ENST00000363520 106 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 SNORA72.2-201ENST00000365028 127 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-160P-201ENST00000384591 107 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 MIR29C-201ENST00000385231 88 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AL390729.2-201ENST00000416137 156 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AC005002.2-201ENST00000438228 269 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AC016717.1-201ENST00000448918 286 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AC117440.1-201ENST00000474107 571 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AC107222.1-201ENST00000510899 637 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-1143P-201ENST00000516125 104 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AL117187.1-201ENST00000555482 181 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AC008739.3-201ENST00000603262 127 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AC005034.5-201ENST00000604219 466 ntBASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC28AQ8IWP9 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 RNU1-52P-201ENST00000384190 164 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 SNORD63-201ENST00000384262 68 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 MIR548F4-201ENST00000408515 105 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 RNU5A-5P-201ENST00000411054 116 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-57P-201ENST00000411348 103 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-221P-201ENST00000459541 99 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-1046P-201ENST00000516538 107 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 206.8 ms