Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 TUG1_4.1-201ENST00000619464 181 ntBASIC3.19□□□□□ -1.9
SHISA3A0PJX4 AC006435.5-201ENST00000624486 112 ntBASIC3.19□□□□□ -1.9
SHISA3A0PJX4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHISA3A0PJX4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.19□□□□□ -1.9
SHISA3A0PJX4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.19□□□□□ -1.9
SHISA3A0PJX4 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.19□□□□□ -1.9
SHISA3A0PJX4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 Y_RNA.127-201ENST00000363386 109 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 Y_RNA.273-201ENST00000364703 102 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 SNORD31B-201ENST00000364977 69 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 RNU6-407P-201ENST00000365280 104 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 Y_RNA.420-201ENST00000384043 110 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 RNU6-1274P-201ENST00000384557 107 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 RNU6-628P-201ENST00000410675 107 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 AC009414.1-201ENST00000427200 443 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 SNORD65B-201ENST00000459126 73 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 RNU7-170P-201ENST00000459303 61 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 AC093663.1-201ENST00000497190 394 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 AC005972.2-201ENST00000604690 348 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 AC012640.5-201ENST00000623897 319 ntBASIC3.18□□□□□ -1.9
SHISA3A0PJX4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
SHISA3A0PJX4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 SNORD116-14-201ENST00000383894 92 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 SNORD116-17-201ENST00000383929 92 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 SNORD116-15-201ENST00000384445 92 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 SNORD116-19-201ENST00000384729 92 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 RPS27P1-201ENST00000450552 247 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 RNU7-197P-201ENST00000458836 62 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 RN7SL442P-201ENST00000473804 320 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 RNU6-971P-201ENST00000516920 106 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 POLR3GP1-201ENST00000594073 261 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 VN1R85P-201ENST00000601587 426 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 AC112484.5-201ENST00000624189 228 ntBASIC3.17□□□□□ -1.9
SHISA3A0PJX4 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.17□□□□□ -1.9
SHISA3A0PJX4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHISA3A0PJX4 SPRR2C-201ENST00000290702 219 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 RNU6-944P-201ENST00000364023 107 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 Y_RNA.218-201ENST00000364218 104 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 RNA5SP139-201ENST00000364340 117 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 RNA5SP479-201ENST00000364858 117 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 Y_RNA.393-201ENST00000383936 102 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 SNORD116-13-201ENST00000384408 92 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 RNA5SP496-201ENST00000391240 109 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 RNU6-383P-201ENST00000410864 94 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SHISA3A0PJX4 AC008134.1-201ENST00000420943 193 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.16□□□□□ -1.9
SHISA3A0PJX4 MICF-203ENST00000432679 129 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 AC006539.3-201ENST00000454258 129 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 AC016925.1-201ENST00000458303 298 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 AC021205.2-201ENST00000480069 347 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 MIR449C-201ENST00000516047 92 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 RNU6-948P-201ENST00000516374 107 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 SNORD59.2-201ENST00000516873 68 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 RNU6-586P-201ENST00000517265 104 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 AC026333.2-201ENST00000542164 106 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 AC106785.1-201ENST00000565935 262 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 MIR3186-201ENST00000577404 85 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 RN7SL703P-201ENST00000578485 302 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 AC093732.2-201ENST00000607950 274 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 AC110079.1-202ENST00000635213 138 ntBASIC3.16□□□□□ -1.9
SHISA3A0PJX4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.16□□□□□ -1.9
SHISA3A0PJX4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHISA3A0PJX4 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.16□□□□□ -1.9
SHISA3A0PJX4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHISA3A0PJX4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHISA3A0PJX4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.16□□□□□ -1.9
SHISA3A0PJX4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHISA3A0PJX4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.9
SHISA3A0PJX4 Y_RNA.71-201ENST00000362892 104 ntBASIC3.15□□□□□ -1.91
SHISA3A0PJX4 RNU6-674P-201ENST00000363831 107 ntBASIC3.15□□□□□ -1.91
SHISA3A0PJX4 RNU6-1235P-201ENST00000384559 107 ntBASIC3.15□□□□□ -1.91
SHISA3A0PJX4 RNU6-57P-201ENST00000411348 103 ntBASIC3.15□□□□□ -1.91
SHISA3A0PJX4 AL135786.1-201ENST00000415892 214 ntBASIC3.15□□□□□ -1.91
SHISA3A0PJX4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.15□□□□□ -1.91
SHISA3A0PJX4 RNU6-437P-201ENST00000459408 95 ntBASIC3.15□□□□□ -1.91
SHISA3A0PJX4 RNU6-498P-201ENST00000459468 107 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 190.3 ms