Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 RPEP5-201ENST00000441137 268 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 RNU6-625P-201ENST00000459412 107 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AC091153.1-201ENST00000466297 402 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 RNA5SP82-201ENST00000516707 92 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AC018448.1-201ENST00000552843 316 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 MYL12BP1-201ENST00000569826 507 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AC026271.5-201ENST00000577873 130 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AC008737.2-201ENST00000599446 118 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AL021879.1-201ENST00000611756 288 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AC011476.5-201ENST00000615594 130 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AC009093.8-201ENST00000641769 292 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 RNU1-91P-201ENST00000364746 163 ntBASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.439-201ENST00000384119 94 ntBASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.498-201ENST00000384460 102 ntBASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 EDDM3CP-201ENST00000415977 425 ntBASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 AC123900.1-201ENST00000420390 96 ntBASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 RPL26P26-201ENST00000480251 434 ntBASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 RNU6-1045P-201ENST00000516321 107 ntBASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 AC025754.2-201ENST00000606491 432 ntBASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 AC116312.1-201ENST00000606841 314 ntBASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
CCDC28AQ8IWP9 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 Y_RNA.153-201ENST00000363615 91 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-1264P-201ENST00000383891 107 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 MIR181A2-201ENST00000384863 110 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 ELOCP21-201ENST00000412558 336 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 AC073910.1-201ENST00000445047 438 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 MTND5P22-201ENST00000458380 195 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 AC025518.1-201ENST00000479856 347 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-408P-201ENST00000515910 100 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-107P-201ENST00000516643 102 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 IGKV2-26-201ENST00000518305 343 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 AC131281.1-201ENST00000522984 164 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 MIR3126-201ENST00000577443 74 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 MIR3922-201ENST00000585192 84 ntBASIC2.46□□□□□ -2.02
CCDC28AQ8IWP9 AC009487.4-201ENST00000624969 3585 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 Y_RNA.99-201ENST00000363138 105 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-975P-201ENST00000384296 105 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 SNORD17-201ENST00000390930 237 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 AL079342.1-201ENST00000401460 267 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 DPH3P2-201ENST00000422618 250 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 TOMM22P2-201ENST00000430735 237 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 AC245102.2-201ENST00000448956 180 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 SLC25A15P5-201ENST00000508033 253 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 RNU2-34P-201ENST00000516534 121 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 RNU1-104P-201ENST00000517280 175 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 AC026403.1-201ENST00000518938 295 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 AC136443.5-201ENST00000603741 370 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 RAC1P9-201ENST00000604990 392 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 MIR6895-201ENST00000613497 78 ntBASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC28AQ8IWP9 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 RNU4-35P-201ENST00000362588 141 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 Y_RNA.459-201ENST00000384251 102 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 RAB28P5-201ENST00000427490 651 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 AC092017.2-201ENST00000427600 362 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 RNU7-57P-201ENST00000459540 60 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 SRIP1-201ENST00000489235 288 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-948P-201ENST00000516374 107 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 AK6P2-201ENST00000549020 471 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 AL137847.3-201ENST00000611521 109 ntBASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.44□□□□□ -2.02
CCDC28AQ8IWP9 MIR410-201ENST00000362222 80 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-961P-201ENST00000363893 105 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 Y_RNA.210-201ENST00000364161 110 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 Y_RNA.276-201ENST00000364732 109 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 SNORA67.1-201ENST00000364749 141 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 RNU6-1310P-201ENST00000384153 107 ntBASIC2.43□□□□□ -2.02
CCDC28AQ8IWP9 SNORD14D-201ENST00000384390 87 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 178.6 ms