Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.85□□□□□ -2.11
CDX1P47902 AL158823.1-201ENST00000418441 478 ntBASIC1.85□□□□□ -2.11
CDX1P47902 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.85□□□□□ -2.11
CDX1P47902 RPS3AP52-201ENST00000435639 297 ntBASIC1.85□□□□□ -2.11
CDX1P47902 AL353689.1-201ENST00000438895 199 ntBASIC1.85□□□□□ -2.11
CDX1P47902 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.85□□□□□ -2.11
CDX1P47902 AC107399.1-201ENST00000451226 265 ntBASIC1.85□□□□□ -2.11
CDX1P47902 RPL23AP3-201ENST00000453844 468 ntBASIC1.85□□□□□ -2.11
CDX1P47902 AC016925.1-201ENST00000458303 298 ntBASIC1.85□□□□□ -2.11
CDX1P47902 RNU1-131P-201ENST00000458943 161 ntBASIC1.85□□□□□ -2.11
CDX1P47902 RN7SL429P-201ENST00000479090 223 ntBASIC1.85□□□□□ -2.11
CDX1P47902 RN7SL489P-201ENST00000486185 223 ntBASIC1.85□□□□□ -2.11
CDX1P47902 RN7SL327P-201ENST00000488659 223 ntBASIC1.85□□□□□ -2.11
CDX1P47902 AC026436.1-201ENST00000510537 270 ntBASIC1.85□□□□□ -2.11
CDX1P47902 RNU7-30P-201ENST00000516835 62 ntBASIC1.85□□□□□ -2.11
CDX1P47902 RNA5SP364-201ENST00000516938 78 ntBASIC1.85□□□□□ -2.11
CDX1P47902 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.85□□□□□ -2.11
CDX1P47902 RRN3P3-201ENST00000549207 578 ntBASIC1.85□□□□□ -2.11
CDX1P47902 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.85□□□□□ -2.11
CDX1P47902 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.85□□□□□ -2.11
CDX1P47902 MIR5696-201ENST00000578474 85 ntBASIC1.85□□□□□ -2.11
CDX1P47902 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC1.85□□□□□ -2.11
CDX1P47902 AC013412.1-201ENST00000610687 192 ntBASIC1.85□□□□□ -2.11
CDX1P47902 RN7SL853P-201ENST00000617250 223 ntBASIC1.85□□□□□ -2.11
CDX1P47902 SDR42E1P4-201ENST00000620894 481 ntBASIC1.85□□□□□ -2.11
CDX1P47902 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.85□□□□□ -2.11
CDX1P47902 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CDX1P47902 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
CDX1P47902 BX322639.1-202ENST00000423987 2213 ntBASIC1.85□□□□□ -2.11
CDX1P47902 AC009487.4-201ENST00000624969 3585 ntBASIC1.84□□□□□ -2.11
CDX1P47902 SNORD115-32-201ENST00000364079 82 ntBASIC1.84□□□□□ -2.11
CDX1P47902 U8.10-201ENST00000384260 133 ntBASIC1.84□□□□□ -2.11
CDX1P47902 MT-TL1-201ENST00000386347 75 ntBASIC1.84□□□□□ -2.11
CDX1P47902 MIR548K-201ENST00000408406 116 ntBASIC1.84□□□□□ -2.11
CDX1P47902 MIR1283-1-201ENST00000408494 87 ntBASIC1.84□□□□□ -2.11
CDX1P47902 RNU6-174P-201ENST00000410406 106 ntBASIC1.84□□□□□ -2.11
CDX1P47902 RNA5SP338-201ENST00000410495 85 ntBASIC1.84□□□□□ -2.11
CDX1P47902 RNA5SP501-201ENST00000410990 112 ntBASIC1.84□□□□□ -2.11
CDX1P47902 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
CDX1P47902 AL356320.1-201ENST00000429616 163 ntBASIC1.84□□□□□ -2.11
CDX1P47902 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.84□□□□□ -2.11
CDX1P47902 AC009237.7-201ENST00000447357 229 ntBASIC1.84□□□□□ -2.11
CDX1P47902 SNORD5.1-201ENST00000458800 75 ntBASIC1.84□□□□□ -2.11
CDX1P47902 RNU7-175P-201ENST00000515915 61 ntBASIC1.84□□□□□ -2.11
CDX1P47902 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.84□□□□□ -2.11
CDX1P47902 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.84□□□□□ -2.11
CDX1P47902 AC091544.4-201ENST00000555268 342 ntBASIC1.84□□□□□ -2.11
CDX1P47902 MIR3169-201ENST00000578032 83 ntBASIC1.84□□□□□ -2.11
CDX1P47902 AC005034.5-201ENST00000604219 466 ntBASIC1.84□□□□□ -2.11
CDX1P47902 AC067747.1-201ENST00000608026 250 ntBASIC1.84□□□□□ -2.11
CDX1P47902 AL773524.1-201ENST00000614065 229 ntBASIC1.84□□□□□ -2.11
CDX1P47902 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.84□□□□□ -2.11
CDX1P47902 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.84□□□□□ -2.11
CDX1P47902 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.84□□□□□ -2.12
CDX1P47902 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
CDX1P47902 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
CDX1P47902 Y_RNA.2-201ENST00000362330 96 ntBASIC1.83□□□□□ -2.12
CDX1P47902 RNA5SP289-201ENST00000362332 137 ntBASIC1.83□□□□□ -2.12
CDX1P47902 Y_RNA.48-201ENST00000362710 103 ntBASIC1.83□□□□□ -2.12
CDX1P47902 RNU6-418P-201ENST00000384035 107 ntBASIC1.83□□□□□ -2.12
CDX1P47902 RNA5SP212-201ENST00000391223 107 ntBASIC1.83□□□□□ -2.12
CDX1P47902 RNA5SP425-201ENST00000410336 112 ntBASIC1.83□□□□□ -2.12
CDX1P47902 RPL37P10-201ENST00000412884 288 ntBASIC1.83□□□□□ -2.12
CDX1P47902 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.83□□□□□ -2.12
CDX1P47902 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.83□□□□□ -2.12
CDX1P47902 RN7SKP210-201ENST00000459176 261 ntBASIC1.83□□□□□ -2.12
CDX1P47902 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.83□□□□□ -2.12
CDX1P47902 AL590705.4-201ENST00000532209 134 ntBASIC1.83□□□□□ -2.12
CDX1P47902 MIR4299-201ENST00000577899 72 ntBASIC1.83□□□□□ -2.12
CDX1P47902 MIR3945-201ENST00000581853 98 ntBASIC1.83□□□□□ -2.12
CDX1P47902 MIR5007-201ENST00000583098 95 ntBASIC1.83□□□□□ -2.12
CDX1P47902 AC046143.2-201ENST00000609789 160 ntBASIC1.83□□□□□ -2.12
CDX1P47902 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CDX1P47902 ZNF299P-201ENST00000406845 1804 ntBASIC1.82□□□□□ -2.12
CDX1P47902 AL159152.1-201ENST00000635019 2587 ntBASIC1.82□□□□□ -2.12
CDX1P47902 RNU6-845P-201ENST00000362578 103 ntBASIC1.82□□□□□ -2.12
CDX1P47902 RNU6-1305P-201ENST00000364353 104 ntBASIC1.82□□□□□ -2.12
CDX1P47902 Y_RNA.319-201ENST00000365138 92 ntBASIC1.82□□□□□ -2.12
CDX1P47902 RNU6-842P-201ENST00000384269 107 ntBASIC1.82□□□□□ -2.12
CDX1P47902 RN7SKP192-201ENST00000411291 327 ntBASIC1.82□□□□□ -2.12
CDX1P47902 AL356379.1-201ENST00000414105 126 ntBASIC1.82□□□□□ -2.12
CDX1P47902 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.82□□□□□ -2.12
CDX1P47902 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.82□□□□□ -2.12
CDX1P47902 TRBV12-1-201ENST00000479785 344 ntBASIC1.82□□□□□ -2.12
CDX1P47902 RPL30P10-201ENST00000488148 337 ntBASIC1.82□□□□□ -2.12
CDX1P47902 RNU6-1016P-201ENST00000516689 94 ntBASIC1.82□□□□□ -2.12
CDX1P47902 RNU6-58P-201ENST00000517143 103 ntBASIC1.82□□□□□ -2.12
CDX1P47902 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.82□□□□□ -2.12
CDX1P47902 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.82□□□□□ -2.12
CDX1P47902 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.82□□□□□ -2.12
CDX1P47902 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.82□□□□□ -2.12
CDX1P47902 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.82□□□□□ -2.12
CDX1P47902 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.82□□□□□ -2.12
CDX1P47902 AC005786.1-201ENST00000588553 154 ntBASIC1.82□□□□□ -2.12
CDX1P47902 AL158827.2-201ENST00000602494 330 ntBASIC1.82□□□□□ -2.12
CDX1P47902 AC018462.2-201ENST00000605375 395 ntBASIC1.82□□□□□ -2.12
CDX1P47902 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.82□□□□□ -2.12
CDX1P47902 AL691447.3-201ENST00000635020 330 ntBASIC1.82□□□□□ -2.12
CDX1P47902 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
CDX1P47902 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 198.6 ms