Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR32-201ENST00000384965 70 ntBASIC1.89□□□□□ -2.11
CDX1P47902 MIR549A-201ENST00000385268 96 ntBASIC1.89□□□□□ -2.11
CDX1P47902 AL512604.1-201ENST00000404812 257 ntBASIC1.89□□□□□ -2.11
CDX1P47902 PMCHL2-203ENST00000457791 237 ntBASIC1.89□□□□□ -2.11
CDX1P47902 RPS27P21-201ENST00000486977 252 ntBASIC1.89□□□□□ -2.11
CDX1P47902 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.89□□□□□ -2.11
CDX1P47902 RMST_6.1-201ENST00000611980 203 ntBASIC1.89□□□□□ -2.11
CDX1P47902 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.89□□□□□ -2.11
CDX1P47902 TCL6_2.1-201ENST00000615162 119 ntBASIC1.89□□□□□ -2.11
CDX1P47902 AL590240.4-201ENST00000616908 390 ntBASIC1.89□□□□□ -2.11
CDX1P47902 SCARNA4-201ENST00000629045 128 ntBASIC1.89□□□□□ -2.11
CDX1P47902 AC016717.2-201ENST00000609089 5141 ntBASIC1.89□□□□□ -2.11
CDX1P47902 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.89□□□□□ -2.11
CDX1P47902 AC008555.8-201ENST00000623602 2168 ntBASIC1.89□□□□□ -2.11
CDX1P47902 AL359851.1-201ENST00000569460 4997 ntBASIC1.88□□□□□ -2.11
CDX1P47902 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
CDX1P47902 MIR21-201ENST00000362134 72 ntBASIC1.88□□□□□ -2.11
CDX1P47902 RNU6-545P-201ENST00000362681 104 ntBASIC1.88□□□□□ -2.11
CDX1P47902 Y_RNA.160-201ENST00000363677 92 ntBASIC1.88□□□□□ -2.11
CDX1P47902 SNORD114-6-201ENST00000364393 72 ntBASIC1.88□□□□□ -2.11
CDX1P47902 RNU6-876P-201ENST00000391295 104 ntBASIC1.88□□□□□ -2.11
CDX1P47902 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
CDX1P47902 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CDX1P47902 AL358453.1-201ENST00000422522 250 ntBASIC1.88□□□□□ -2.11
CDX1P47902 AC139712.2-201ENST00000424302 339 ntBASIC1.88□□□□□ -2.11
CDX1P47902 USP9YP30-201ENST00000430729 455 ntBASIC1.88□□□□□ -2.11
CDX1P47902 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.88□□□□□ -2.11
CDX1P47902 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.88□□□□□ -2.11
CDX1P47902 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.88□□□□□ -2.11
CDX1P47902 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.88□□□□□ -2.11
CDX1P47902 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.88□□□□□ -2.11
CDX1P47902 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.88□□□□□ -2.11
CDX1P47902 AC005668.1-201ENST00000571142 476 ntBASIC1.88□□□□□ -2.11
CDX1P47902 U1.36-201ENST00000620684 176 ntBASIC1.88□□□□□ -2.11
CDX1P47902 MIR1291-201ENST00000627649 87 ntBASIC1.88□□□□□ -2.11
CDX1P47902 AL133216.2-202ENST00000634512 349 ntBASIC1.88□□□□□ -2.11
CDX1P47902 KPNA2P1-201ENST00000458289 1591 ntBASIC1.88□□□□□ -2.11
CDX1P47902 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
CDX1P47902 SNORD114-30-201ENST00000364448 72 ntBASIC1.87□□□□□ -2.11
CDX1P47902 RNA5SP138-201ENST00000365098 114 ntBASIC1.87□□□□□ -2.11
CDX1P47902 RNU6-767P-201ENST00000384132 107 ntBASIC1.87□□□□□ -2.11
CDX1P47902 SNORA12.2-201ENST00000391040 156 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AC074085.1-201ENST00000413598 418 ntBASIC1.87□□□□□ -2.11
CDX1P47902 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
CDX1P47902 MTCO3P46-201ENST00000425787 232 ntBASIC1.87□□□□□ -2.11
CDX1P47902 MTND1P2-201ENST00000430604 821 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.87□□□□□ -2.11
CDX1P47902 Z82188.1-201ENST00000436709 154 ntBASIC1.87□□□□□ -2.11
CDX1P47902 MTCO3P8-201ENST00000453691 755 ntBASIC1.87□□□□□ -2.11
CDX1P47902 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.87□□□□□ -2.11
CDX1P47902 snoU13.30-201ENST00000458951 104 ntBASIC1.87□□□□□ -2.11
CDX1P47902 RNA5SP57-201ENST00000459463 123 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AC007215.1-201ENST00000464893 276 ntBASIC1.87□□□□□ -2.11
CDX1P47902 MTND5P5-201ENST00000503764 376 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AC234781.5-201ENST00000508429 271 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AC116337.1-201ENST00000509680 687 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AC046134.1-201ENST00000514454 666 ntBASIC1.87□□□□□ -2.11
CDX1P47902 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.87□□□□□ -2.11
CDX1P47902 RNU6-1198P-201ENST00000516904 67 ntBASIC1.87□□□□□ -2.11
CDX1P47902 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.87□□□□□ -2.11
CDX1P47902 DEFB131C-201ENST00000528817 165 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AC087441.2-201ENST00000529141 262 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AC021269.2-201ENST00000532318 330 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AC243960.4-201ENST00000600532 288 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AL162373.1-201ENST00000620433 407 ntBASIC1.87□□□□□ -2.11
CDX1P47902 uc_338.20-201ENST00000621563 178 ntBASIC1.87□□□□□ -2.11
CDX1P47902 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.87□□□□□ -2.11
CDX1P47902 ZNF204P-201ENST00000416749 2397 ntBASIC1.87□□□□□ -2.11
CDX1P47902 CENPCP1-201ENST00000533085 2578 ntBASIC1.86□□□□□ -2.11
CDX1P47902 RNU6-541P-201ENST00000384709 110 ntBASIC1.86□□□□□ -2.11
CDX1P47902 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CDX1P47902 MIR300-201ENST00000401138 83 ntBASIC1.86□□□□□ -2.11
CDX1P47902 RNU4-53P-201ENST00000410828 140 ntBASIC1.86□□□□□ -2.11
CDX1P47902 AL135786.1-201ENST00000415892 214 ntBASIC1.86□□□□□ -2.11
CDX1P47902 MTND2P29-201ENST00000438595 412 ntBASIC1.86□□□□□ -2.11
CDX1P47902 RPL23AP6-201ENST00000446637 472 ntBASIC1.86□□□□□ -2.11
CDX1P47902 AC007395.1-201ENST00000451333 677 ntBASIC1.86□□□□□ -2.11
CDX1P47902 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.86□□□□□ -2.11
CDX1P47902 RNU6-717P-201ENST00000459076 104 ntBASIC1.86□□□□□ -2.11
CDX1P47902 RPL31P58-201ENST00000469001 379 ntBASIC1.86□□□□□ -2.11
CDX1P47902 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.86□□□□□ -2.11
CDX1P47902 RNA5SP54-201ENST00000516951 92 ntBASIC1.86□□□□□ -2.11
CDX1P47902 MIR4753-201ENST00000585119 83 ntBASIC1.86□□□□□ -2.11
CDX1P47902 AC010928.2-201ENST00000588017 287 ntBASIC1.86□□□□□ -2.11
CDX1P47902 AC103810.6-201ENST00000606708 136 ntBASIC1.86□□□□□ -2.11
CDX1P47902 AC064859.1-201ENST00000624741 174 ntBASIC1.86□□□□□ -2.11
CDX1P47902 AL359697.1-201ENST00000624879 587 ntBASIC1.86□□□□□ -2.11
CDX1P47902 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
CDX1P47902 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.86□□□□□ -2.11
CDX1P47902 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
CDX1P47902 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
CDX1P47902 RNU6-1059P-201ENST00000363752 98 ntBASIC1.85□□□□□ -2.11
CDX1P47902 RNU6-596P-201ENST00000365395 98 ntBASIC1.85□□□□□ -2.11
CDX1P47902 XGY1-201ENST00000381172 446 ntBASIC1.85□□□□□ -2.11
CDX1P47902 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CDX1P47902 Y_RNA.533-201ENST00000384596 114 ntBASIC1.85□□□□□ -2.11
CDX1P47902 MIR487A-201ENST00000385009 80 ntBASIC1.85□□□□□ -2.11
CDX1P47902 MIR153-2-201ENST00000385225 87 ntBASIC1.85□□□□□ -2.11
CDX1P47902 MIR548F5-201ENST00000408421 86 ntBASIC1.85□□□□□ -2.11
CDX1P47902 RN7SKP32-201ENST00000410167 303 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 222.5 ms