Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SNRPEP8-201ENST00000442866 260 ntBASIC1.93□□□□□ -2.1
CDX1P47902 RNU6-329P-201ENST00000459618 107 ntBASIC1.93□□□□□ -2.1
CDX1P47902 AC104435.1-201ENST00000483483 166 ntBASIC1.93□□□□□ -2.1
CDX1P47902 AF186996.7-201ENST00000492781 209 ntBASIC1.93□□□□□ -2.1
CDX1P47902 ATP5EP1-201ENST00000510257 156 ntBASIC1.93□□□□□ -2.1
CDX1P47902 Y_RNA.682-201ENST00000516457 100 ntBASIC1.93□□□□□ -2.1
CDX1P47902 RNA5SP24-201ENST00000516478 95 ntBASIC1.93□□□□□ -2.1
CDX1P47902 RNU2-44P-201ENST00000516795 194 ntBASIC1.93□□□□□ -2.1
CDX1P47902 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.93□□□□□ -2.1
CDX1P47902 MIR4287-201ENST00000579398 78 ntBASIC1.93□□□□□ -2.1
CDX1P47902 MIR4448-201ENST00000584360 86 ntBASIC1.93□□□□□ -2.1
CDX1P47902 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.93□□□□□ -2.1
CDX1P47902 AC060780.3-201ENST00000589464 80 ntBASIC1.93□□□□□ -2.1
CDX1P47902 AC005858.4-201ENST00000623191 700 ntBASIC1.93□□□□□ -2.1
CDX1P47902 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
CDX1P47902 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.92□□□□□ -2.1
CDX1P47902 RNU1-58P-201ENST00000362413 163 ntBASIC1.92□□□□□ -2.1
CDX1P47902 Y_RNA.248-201ENST00000364501 109 ntBASIC1.92□□□□□ -2.1
CDX1P47902 RNU6-160P-201ENST00000384591 107 ntBASIC1.92□□□□□ -2.1
CDX1P47902 MIR518C-201ENST00000384822 101 ntBASIC1.92□□□□□ -2.1
CDX1P47902 RNA5SP465-201ENST00000391195 109 ntBASIC1.92□□□□□ -2.1
CDX1P47902 U3.40-201ENST00000408706 208 ntBASIC1.92□□□□□ -2.1
CDX1P47902 RNA5SP450-201ENST00000411206 102 ntBASIC1.92□□□□□ -2.1
CDX1P47902 RNA5SP508-201ENST00000411327 119 ntBASIC1.92□□□□□ -2.1
CDX1P47902 AC123900.1-201ENST00000420390 96 ntBASIC1.92□□□□□ -2.1
CDX1P47902 HMGN2P3-201ENST00000433603 273 ntBASIC1.92□□□□□ -2.1
CDX1P47902 HMGN2P5-201ENST00000436882 273 ntBASIC1.92□□□□□ -2.1
CDX1P47902 AL035666.1-201ENST00000446195 348 ntBASIC1.92□□□□□ -2.1
CDX1P47902 OR2AQ1P-201ENST00000451972 200 ntBASIC1.92□□□□□ -2.1
CDX1P47902 TOMM22P6-201ENST00000465035 409 ntBASIC1.92□□□□□ -2.1
CDX1P47902 AP003033.1-201ENST00000527244 415 ntBASIC1.92□□□□□ -2.1
CDX1P47902 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX1P47902 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.92□□□□□ -2.1
CDX1P47902 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.92□□□□□ -2.1
CDX1P47902 MTND4P5-201ENST00000435821 1374 ntBASIC1.92□□□□□ -2.1
CDX1P47902 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.92□□□□□ -2.1
CDX1P47902 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
CDX1P47902 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CDX1P47902 MTND5P9-201ENST00000503854 1755 ntBASIC1.91□□□□□ -2.1
CDX1P47902 CASC19-280ENST00000642102 1351 ntBASIC1.91□□□□□ -2.1
CDX1P47902 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CDX1P47902 RNU6-23P-201ENST00000363283 107 ntBASIC1.91□□□□□ -2.1
CDX1P47902 SNORD31B-201ENST00000364977 69 ntBASIC1.91□□□□□ -2.1
CDX1P47902 Y_RNA.332-201ENST00000365271 113 ntBASIC1.91□□□□□ -2.1
CDX1P47902 RNU1-51P-201ENST00000365345 176 ntBASIC1.91□□□□□ -2.1
CDX1P47902 MIR17-201ENST00000385012 84 ntBASIC1.91□□□□□ -2.1
CDX1P47902 AL356776.1-201ENST00000406574 447 ntBASIC1.91□□□□□ -2.1
CDX1P47902 MTND3P8-201ENST00000412909 339 ntBASIC1.91□□□□□ -2.1
CDX1P47902 RPS26P42-201ENST00000413485 326 ntBASIC1.91□□□□□ -2.1
CDX1P47902 RPL30P16-201ENST00000419341 429 ntBASIC1.91□□□□□ -2.1
CDX1P47902 EIF4EP2-201ENST00000422816 654 ntBASIC1.91□□□□□ -2.1
CDX1P47902 AC096920.1-201ENST00000423991 241 ntBASIC1.91□□□□□ -2.1
CDX1P47902 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX1P47902 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX1P47902 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX1P47902 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX1P47902 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.91□□□□□ -2.1
CDX1P47902 MIR4742-201ENST00000581069 85 ntBASIC1.91□□□□□ -2.1
CDX1P47902 7SK.7-201ENST00000603504 247 ntBASIC1.91□□□□□ -2.1
CDX1P47902 AC016727.2-201ENST00000603988 621 ntBASIC1.91□□□□□ -2.1
CDX1P47902 AC009318.2-201ENST00000610917 651 ntBASIC1.91□□□□□ -2.1
CDX1P47902 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.91□□□□□ -2.1
CDX1P47902 AC005562.2-201ENST00000618264 111 ntBASIC1.91□□□□□ -2.1
CDX1P47902 AC098657.3-201ENST00000620434 263 ntBASIC1.91□□□□□ -2.1
CDX1P47902 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.91□□□□□ -2.1
CDX1P47902 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.1
CDX1P47902 CBX3P1-201ENST00000325243 554 ntBASIC1.9□□□□□ -2.11
CDX1P47902 Y_RNA.72-201ENST00000362894 103 ntBASIC1.9□□□□□ -2.11
CDX1P47902 RNU1-76P-201ENST00000362903 159 ntBASIC1.9□□□□□ -2.11
CDX1P47902 RNU4-9P-201ENST00000364951 139 ntBASIC1.9□□□□□ -2.11
CDX1P47902 MIR597-201ENST00000384968 97 ntBASIC1.9□□□□□ -2.11
CDX1P47902 MIR320B2-201ENST00000408479 138 ntBASIC1.9□□□□□ -2.11
CDX1P47902 MIR1283-2-201ENST00000408621 87 ntBASIC1.9□□□□□ -2.11
CDX1P47902 RNU2-40P-201ENST00000410833 196 ntBASIC1.9□□□□□ -2.11
CDX1P47902 AC009963.1-201ENST00000417265 157 ntBASIC1.9□□□□□ -2.11
CDX1P47902 AC004386.2-201ENST00000441858 148 ntBASIC1.9□□□□□ -2.11
CDX1P47902 MTND1P17-201ENST00000448961 204 ntBASIC1.9□□□□□ -2.11
CDX1P47902 AC079354.2-201ENST00000453523 154 ntBASIC1.9□□□□□ -2.11
CDX1P47902 FO393415.2-201ENST00000480085 343 ntBASIC1.9□□□□□ -2.11
CDX1P47902 RN7SL636P-201ENST00000497504 294 ntBASIC1.9□□□□□ -2.11
CDX1P47902 AC008413.1-201ENST00000511864 177 ntBASIC1.9□□□□□ -2.11
CDX1P47902 MIR514B-201ENST00000516774 80 ntBASIC1.9□□□□□ -2.11
CDX1P47902 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.9□□□□□ -2.11
CDX1P47902 AC026470.2-201ENST00000561492 181 ntBASIC1.9□□□□□ -2.11
CDX1P47902 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.9□□□□□ -2.11
CDX1P47902 MIR5006-201ENST00000583027 110 ntBASIC1.9□□□□□ -2.11
CDX1P47902 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.9□□□□□ -2.11
CDX1P47902 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.9□□□□□ -2.11
CDX1P47902 CYP2C61P-201ENST00000604072 290 ntBASIC1.9□□□□□ -2.11
CDX1P47902 SNRPGP20-201ENST00000604477 205 ntBASIC1.9□□□□□ -2.11
CDX1P47902 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.9□□□□□ -2.11
CDX1P47902 AL590808.1-201ENST00000618696 141 ntBASIC1.9□□□□□ -2.11
CDX1P47902 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.9□□□□□ -2.11
CDX1P47902 LINC02555-201ENST00000563933 1951 ntBASIC1.9□□□□□ -2.11
CDX1P47902 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.89□□□□□ -2.11
CDX1P47902 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.89□□□□□ -2.11
CDX1P47902 Y_RNA.132-201ENST00000363421 102 ntBASIC1.89□□□□□ -2.11
CDX1P47902 RNA5SP493-201ENST00000364115 91 ntBASIC1.89□□□□□ -2.11
CDX1P47902 RNA5SP126-201ENST00000365092 109 ntBASIC1.89□□□□□ -2.11
CDX1P47902 SNORA41-201ENST00000384675 132 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 173.8 ms