Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 PKM-209ENST00000563986 825 ntTSL 216.07■□□□□ 0.162e-6■□□□□ 9
U2AF1Q01081 RAB11FIP3-203ENST00000434585 3550 ntAPPRIS ALT2 TSL 516■□□□□ 0.152e-6■□□□□ 9
U2AF1Q01081 IPO5-202ENST00000357602 4335 ntAPPRIS P1 TSL 515.89■□□□□ 0.132e-6■□□□□ 9
U2AF1Q01081 PKM-202ENST00000335181 2318 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.092e-6■□□□□ 9
U2AF1Q01081 PKM-219ENST00000567118 2254 ntTSL 215□□□□□ -0.012e-6■□□□□ 9
U2AF1Q01081 PKM-205ENST00000561609 1568 ntTSL 1 (best)14.98□□□□□ -0.012e-6■□□□□ 9
U2AF1Q01081 RAB11FIP3-205ENST00000450428 3203 ntTSL 2 BASIC14.91□□□□□ -0.022e-6■□□□□ 9
U2AF1Q01081 ACOX1-204ENST00000573078 2417 ntTSL 214.54□□□□□ -0.082e-6■□□□□ 9
U2AF1Q01081 SOD2-203ENST00000367055 990 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.152e-8■□□□□ 9
U2AF1Q01081 RAB11FIP3-211ENST00000495663 529 ntTSL 213.45□□□□□ -0.262e-6■□□□□ 9
U2AF1Q01081 ACOX1-202ENST00000301608 2215 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.272e-6■□□□□ 9
U2AF1Q01081 ACOX1-211ENST00000591857 681 ntTSL 313.26□□□□□ -0.292e-6■□□□□ 9
U2AF1Q01081 SOD2-216ENST00000546260 4302 ntTSL 512.5□□□□□ -0.412e-8■□□□□ 9
U2AF1Q01081 PKM-212ENST00000564440 3016 ntTSL 1 (best)12.11□□□□□ -0.472e-6■□□□□ 9
U2AF1Q01081 IPO5-208ENST00000469360 3505 ntTSL 211.37□□□□□ -0.592e-6■□□□□ 9
U2AF1Q01081 DDX3Y-202ENST00000360160 2709 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.772e-6■□□□□ 9
U2AF1Q01081 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.912e-8■□□□□ 9
U2AF1Q01081 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.932e-6■□□□□ 9
U2AF1Q01081 PKM-225ENST00000570166 626 ntTSL 29.16□□□□□ -0.942e-6■□□□□ 9
U2AF1Q01081 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.252e-6■□□□□ 9
U2AF1Q01081 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC6.04□□□□□ -1.442e-6■□□□□ 9
U2AF1Q01081 DDX3Y-205ENST00000463199 621 ntTSL 34□□□□□ -1.772e-6■□□□□ 9
U2AF1Q01081 MGST2-203ENST00000503816 1780 ntTSL 522.1■■□□□ 1.131e-8■□□□□ 8.9
U2AF1Q01081 MGST2-206ENST00000515137 1013 ntTSL 1 (best)11.88□□□□□ -0.511e-8■□□□□ 8.9
U2AF1Q01081 MGST2-207ENST00000616265 1278 ntAPPRIS P1 TSL 4 BASIC11.82□□□□□ -0.521e-8■□□□□ 8.9
U2AF1Q01081 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.951e-8■□□□□ 8.9
U2AF1Q01081 MGST2-204ENST00000506797 634 ntTSL 2 BASIC6.59□□□□□ -1.351e-8■□□□□ 8.9
U2AF1Q01081 SPTBN1-205ENST00000496323 2225 ntTSL 218.07■□□□□ 0.482e-11■□□□□ 8.9
U2AF1Q01081 CTTN-205ENST00000415461 1021 ntTSL 326.97■■□□□ 1.911e-6■□□□□ 8.9
U2AF1Q01081 CTTN-211ENST00000527622 597 ntTSL 425.23■■□□□ 1.631e-6■□□□□ 8.9
U2AF1Q01081 FN1-223ENST00000490833 699 ntTSL 38.13□□□□□ -1.111e-8■□□□□ 8.9
U2AF1Q01081 FN1-219ENST00000474036 1058 ntTSL 26.49□□□□□ -1.371e-8■□□□□ 8.9
U2AF1Q01081 KLHL24-203ENST00000437402 563 ntTSL 529.54■■■□□ 2.324e-6■□□□□ 8.9
U2AF1Q01081 UBE2G2-205ENST00000478200 637 ntTSL 428.22■■■□□ 2.111e-9■□□□□ 8.9
U2AF1Q01081 UBE2G2-212ENST00000497664 590 ntTSL 428.22■■■□□ 2.111e-9■□□□□ 8.9
U2AF1Q01081 KLHL24-212ENST00000481126 389 ntTSL 228.07■■■□□ 2.084e-6■□□□□ 8.9
U2AF1Q01081 KLHL24-213ENST00000482138 588 ntTSL 428.07■■■□□ 2.084e-6■□□□□ 8.9
U2AF1Q01081 KLHL24-215ENST00000493074 627 ntTSL 428.07■■■□□ 2.084e-6■□□□□ 8.9
U2AF1Q01081 KLHL24-204ENST00000454495 603 ntTSL 327.42■■□□□ 1.984e-6■□□□□ 8.9
U2AF1Q01081 KLHL24-202ENST00000427201 562 ntTSL 426.43■■□□□ 1.824e-6■□□□□ 8.9
U2AF1Q01081 KLHL24-206ENST00000461813 587 ntTSL 426.43■■□□□ 1.824e-6■□□□□ 8.9
U2AF1Q01081 UBE2G2-209ENST00000491513 744 ntTSL 425.9■■□□□ 1.741e-9■□□□□ 8.9
U2AF1Q01081 UBE2G2-211ENST00000497630 933 ntTSL 225.66■■□□□ 1.71e-9■□□□□ 8.9
U2AF1Q01081 KLHL24-209ENST00000473045 542 ntTSL 425.45■■□□□ 1.664e-6■□□□□ 8.9
U2AF1Q01081 ATF5-203ENST00000596658 722 ntTSL 224.45■■□□□ 1.54e-6■□□□□ 8.9
U2AF1Q01081 KLHL24-208ENST00000468101 574 ntTSL 423.48■■□□□ 1.354e-6■□□□□ 8.9
U2AF1Q01081 ATF5-204ENST00000597227 828 ntTSL 322.12■■□□□ 1.134e-6■□□□□ 8.9
U2AF1Q01081 UBE2G2-204ENST00000477954 1034 ntTSL 321.28■■□□□ 11e-9■□□□□ 8.9
U2AF1Q01081 ATF5-205ENST00000600336 682 ntTSL 2 BASIC20.54■□□□□ 0.884e-6■□□□□ 8.9
U2AF1Q01081 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.14■□□□□ 0.811e-9■□□□□ 8.9
U2AF1Q01081 CACUL1-206ENST00000493518 3217 ntTSL 1 (best)20.02■□□□□ 0.84e-6■□□□□ 8.9
U2AF1Q01081 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.694e-6■□□□□ 8.9
U2AF1Q01081 DDX39B-206ENST00000419338 928 ntTSL 518.68■□□□□ 0.584e-14■□□□□ 8.9
U2AF1Q01081 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.481e-9■□□□□ 8.9
U2AF1Q01081 DDX39B-204ENST00000418897 583 ntTSL 315.8■□□□□ 0.124e-14■□□□□ 8.9
U2AF1Q01081 DDX39B-208ENST00000428098 817 ntTSL 315.8■□□□□ 0.124e-14■□□□□ 8.9
U2AF1Q01081 DDX39B-212ENST00000456662 932 ntTSL 515.8■□□□□ 0.124e-14■□□□□ 8.9
U2AF1Q01081 DDX39B-213ENST00000456976 720 ntTSL 515.7■□□□□ 0.14e-14■□□□□ 8.9
U2AF1Q01081 DDX39B-205ENST00000419020 583 ntTSL 315.32■□□□□ 0.044e-14■□□□□ 8.9
U2AF1Q01081 DDX39B-209ENST00000428450 633 ntTSL 415.28■□□□□ 0.044e-14■□□□□ 8.9
U2AF1Q01081 CACUL1-201ENST00000369151 11311 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.034e-6■□□□□ 8.9
U2AF1Q01081 ATP6V1G2-DDX39B-203ENST00000480131 552 ntAPPRIS P1 TSL 414.92□□□□□ -0.024e-14■□□□□ 8.9
U2AF1Q01081 DDX39B-211ENST00000449757 591 ntTSL 313.76□□□□□ -0.214e-14■□□□□ 8.9
U2AF1Q01081 CACUL1-207ENST00000544392 1060 ntTSL 211.87□□□□□ -0.514e-6■□□□□ 8.9
U2AF1Q01081 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC10.29□□□□□ -0.764e-6■□□□□ 8.9
U2AF1Q01081 CACUL1-204ENST00000489169 517 ntTSL 29.66□□□□□ -0.864e-6■□□□□ 8.9
U2AF1Q01081 SPG11-206ENST00000558093 526 ntTSL 34.29□□□□□ -1.724e-6■□□□□ 8.9
U2AF1Q01081 MIDN-202ENST00000586757 1163 ntAPPRIS ALT2 TSL 532.66■■■□□ 2.821e-7■□□□□ 8.9
U2AF1Q01081 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.341e-7■□□□□ 8.9
U2AF1Q01081 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.971e-7■□□□□ 8.9
U2AF1Q01081 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC21.37■■□□□ 1.016e-7■□□□□ 8.9
U2AF1Q01081 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC20.27■□□□□ 0.846e-7■□□□□ 8.9
U2AF1Q01081 MDM2-204ENST00000311420 1583 ntTSL 514.34□□□□□ -0.116e-7■□□□□ 8.9
U2AF1Q01081 MDM2-222ENST00000523991 505 ntTSL 1 (best)11.4□□□□□ -0.586e-7■□□□□ 8.9
U2AF1Q01081 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.696e-7■□□□□ 8.9
U2AF1Q01081 MDM2-213ENST00000393417 1683 ntTSL 510.15□□□□□ -0.786e-7■□□□□ 8.9
U2AF1Q01081 MDM2-211ENST00000393415 842 ntTSL 58.16□□□□□ -1.16e-7■□□□□ 8.9
U2AF1Q01081 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.186e-7■□□□□ 8.9
U2AF1Q01081 MDM2-230ENST00000543323 427 ntTSL 1 (best)7.45□□□□□ -1.226e-7■□□□□ 8.9
U2AF1Q01081 MDM2-224ENST00000537182 1011 ntTSL 1 (best)7.23□□□□□ -1.256e-7■□□□□ 8.9
U2AF1Q01081 MDM2-234ENST00000546048 363 ntTSL 56.8□□□□□ -1.326e-7■□□□□ 8.9
U2AF1Q01081 MDM2-220ENST00000496959 897 ntTSL 1 (best)6.69□□□□□ -1.346e-7■□□□□ 8.9
U2AF1Q01081 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC6.04□□□□□ -1.446e-7■□□□□ 8.9
U2AF1Q01081 MDM2-228ENST00000542502 1127 ntTSL 1 (best)5.71□□□□□ -1.56e-7■□□□□ 8.9
U2AF1Q01081 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC5.49□□□□□ -1.536e-7■□□□□ 8.9
U2AF1Q01081 MDM2-218ENST00000481186 1056 ntTSL 55.27□□□□□ -1.576e-7■□□□□ 8.9
U2AF1Q01081 MDM2-223ENST00000536089 1181 ntTSL 1 (best)5.27□□□□□ -1.576e-7■□□□□ 8.9
U2AF1Q01081 MDM2-226ENST00000540352 1315 ntTSL 1 (best)5.25□□□□□ -1.576e-7■□□□□ 8.9
U2AF1Q01081 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.47□□□□□ -1.696e-7■□□□□ 8.9
U2AF1Q01081 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.22□□□□□ -1.736e-7■□□□□ 8.9
U2AF1Q01081 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.01□□□□□ -1.776e-7■□□□□ 8.9
U2AF1Q01081 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.86□□□□□ -1.796e-7■□□□□ 8.9
U2AF1Q01081 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.86□□□□□ -1.796e-7■□□□□ 8.9
U2AF1Q01081 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.58□□□□□ -1.846e-7■□□□□ 8.9
U2AF1Q01081 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.92□□□□□ -1.946e-7■□□□□ 8.9
U2AF1Q01081 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.44□□□□□ -2.026e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-210ENST00000498208 419 ntTSL 530.93■■■□□ 2.544e-7■□□□□ 8.9
U2AF1Q01081 HMGB2-204ENST00000506267 629 ntTSL 330.17■■■□□ 2.424e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-208ENST00000473485 1664 ntTSL 229.45■■■□□ 2.314e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC28.9■■■□□ 2.224e-7■□□□□ 8.9
Retrieved 100 of 10,096 protein–RNA pairs in 45.6 ms