Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 AC018755.3-202ENST00000596210 929 ntBASIC13.29□□□□□ -0.28
VPS25Q9BRG1 NRG1-221ENST00000614767 762 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 GATB-213ENST00000515812 1893 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS25Q9BRG1 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 RP9P-202ENST00000450133 1212 ntBASIC13.28□□□□□ -0.28
VPS25Q9BRG1 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 AC093536.1-201ENST00000569153 554 ntBASIC13.28□□□□□ -0.28
VPS25Q9BRG1 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS25Q9BRG1 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 CD276-201ENST00000318424 2738 ntTSL 5 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
VPS25Q9BRG1 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS25Q9BRG1 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms