Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.27□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL606537.1-201ENST00000607258 2011 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.82-201ENST00000363000 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.92-201ENST00000363043 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.235-201ENST00000364412 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.306-201ENST00000365015 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.312-201ENST00000365089 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.322-201ENST00000365151 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-44P-201ENST00000384045 107 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.488-201ENST00000384403 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SNORA12.2-201ENST00000391040 156 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6ATAC10P-201ENST00000408635 111 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RPS15AP40-201ENST00000419621 391 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 IGKV1OR9-2-201ENST00000431378 277 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 USP9YP7-201ENST00000436723 430 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 USP9YP32-201ENST00000452432 430 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.650-201ENST00000459002 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-1219P-201ENST00000516143 112 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.676-201ENST00000516393 96 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-919P-201ENST00000516731 104 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-914P-201ENST00000516749 109 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.706-201ENST00000516933 99 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.777-201ENST00000516982 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 MIR4659A-201ENST00000580269 81 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.771-201ENST00000598668 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL355812.1-201ENST00000603215 216 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC009314.1-201ENST00000603871 304 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AP000787.2-201ENST00000604432 568 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SNORD113-5-201ENST00000607261 78 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 MIR7702-201ENST00000621931 59 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.789-201ENST00000622480 102 ntBASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.275-201ENST00000364726 110 ntBASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNA5SP267-201ENST00000364893 126 ntBASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-658P-201ENST00000384606 106 ntBASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-131P-201ENST00000391144 107 ntBASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC073587.1-201ENST00000447093 876 ntBASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC010469.1-201ENST00000463864 576 ntBASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RPS27P26-201ENST00000494583 239 ntBASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SNORA31.3-201ENST00000516029 96 ntBASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC022695.1-201ENST00000522089 237 ntBASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC024614.2-201ENST00000577584 372 ntBASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC073073.2-201ENST00000609827 2578 ntBASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SNORA25.1-201ENST00000362326 128 ntBASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNA5SP205-201ENST00000364653 136 ntBASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-923P-201ENST00000364753 107 ntBASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RN7SKP156-201ENST00000410308 342 ntBASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL160275.2-201ENST00000412010 394 ntBASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 ANXA2P1-201ENST00000505539 926 ntBASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC022968.1-201ENST00000567372 442 ntBASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC123912.5-201ENST00000605470 343 ntBASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 MIR4275-201ENST00000636486 87 ntBASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.24□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 PRO1804-201ENST00000623780 2050 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 189.3 ms