Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 NOP56-220ENST00000616692 2662 ntTSL 1 (best)17.48■□□□□ 0.395e-8■□□□□ 9.4
U2AF1Q01081 NOP56-213ENST00000480992 929 ntTSL 516.47■□□□□ 0.235e-8■□□□□ 9.4
U2AF1Q01081 NOP56-202ENST00000415272 1628 ntTSL 512.56□□□□□ -0.45e-8■□□□□ 9.4
U2AF1Q01081 NOP56-207ENST00000467196 1320 ntTSL 511.47□□□□□ -0.575e-8■□□□□ 9.4
U2AF1Q01081 NOP56-214ENST00000484998 998 ntTSL 510.52□□□□□ -0.735e-8■□□□□ 9.4
U2AF1Q01081 TIMM44-208ENST00000598968 797 ntTSL 330.28■■■□□ 2.441e-8■□□□□ 9.3
U2AF1Q01081 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.951e-8■□□□□ 9.3
U2AF1Q01081 TIMM44-203ENST00000595831 1797 ntTSL 519.73■□□□□ 0.751e-8■□□□□ 9.3
U2AF1Q01081 TIMM44-204ENST00000595876 1206 ntTSL 1 (best)18.47■□□□□ 0.551e-8■□□□□ 9.3
U2AF1Q01081 TIMM44-202ENST00000595565 868 ntTSL 318.37■□□□□ 0.531e-8■□□□□ 9.3
U2AF1Q01081 TIMM44-209ENST00000599650 921 ntTSL 218.17■□□□□ 0.51e-8■□□□□ 9.3
U2AF1Q01081 VCL-202ENST00000372755 6489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.091e-8■□□□□ 9.3
U2AF1Q01081 VCL-201ENST00000211998 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.351e-8■□□□□ 9.3
U2AF1Q01081 VCL-207ENST00000624354 3307 ntTSL 211.02□□□□□ -0.641e-8■□□□□ 9.3
U2AF1Q01081 VCL-206ENST00000623461 7995 ntTSL 1 (best)10.97□□□□□ -0.651e-8■□□□□ 9.3
U2AF1Q01081 ELL2-206ENST00000513343 582 ntTSL 327.41■■□□□ 1.983e-7■□□□□ 9.3
U2AF1Q01081 AGFG1-208ENST00000486932 566 ntTSL 45.18□□□□□ -1.583e-7■□□□□ 9.3
U2AF1Q01081 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.012e-8■□□□□ 9.3
U2AF1Q01081 DENND5A-205ENST00000526707 2861 ntTSL 224.3■■□□□ 1.482e-8■□□□□ 9.3
U2AF1Q01081 DENND5A-210ENST00000530044 4060 ntTSL 2 BASIC14.27□□□□□ -0.122e-8■□□□□ 9.3
U2AF1Q01081 DENND5A-207ENST00000527896 604 ntTSL 35.96□□□□□ -1.462e-8■□□□□ 9.3
U2AF1Q01081 TIAL1-201ENST00000369086 490 ntTSL 25.72□□□□□ -1.497e-8■□□□□ 9.3
U2AF1Q01081 DENND5A-212ENST00000530867 529 ntTSL 24.79□□□□□ -1.642e-8■□□□□ 9.3
U2AF1Q01081 TIAL1-206ENST00000462373 260 ntTSL 33.35□□□□□ -1.877e-8■□□□□ 9.3
U2AF1Q01081 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC37.71■■■■□ 3.633e-7■□□□□ 9.3
U2AF1Q01081 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.373e-7■□□□□ 9.3
U2AF1Q01081 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.98□□□□□ -1.773e-7■□□□□ 9.3
U2AF1Q01081 ETNK1-203ENST00000538218 1659 ntTSL 1 (best)22.16■■□□□ 1.146e-6■□□□□ 9.3
U2AF1Q01081 ETNK1-201ENST00000266517 7159 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.026e-6■□□□□ 9.3
U2AF1Q01081 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.821e-6■□□□□ 9.3
U2AF1Q01081 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.971e-6■□□□□ 9.3
U2AF1Q01081 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.061e-6■□□□□ 9.3
U2AF1Q01081 GOLGB1-205ENST00000482512 10295 ntTSL 1 (best)7.49□□□□□ -1.211e-6■□□□□ 9.3
U2AF1Q01081 GOLGB1-208ENST00000494517 4959 ntAPPRIS ALT2 TSL 1 (best)6.95□□□□□ -1.31e-6■□□□□ 9.3
U2AF1Q01081 GOLGB1-206ENST00000489400 3093 ntAPPRIS ALT2 TSL 24.93□□□□□ -1.621e-6■□□□□ 9.3
U2AF1Q01081 THRAP3-201ENST00000354618 4432 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.113e-11■□□□□ 9.3
U2AF1Q01081 FREM1-201ENST00000380875 6126 ntTSL 1 (best)11.72□□□□□ -0.536e-7■□□□□ 9.3
U2AF1Q01081 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.566e-7■□□□□ 9.3
U2AF1Q01081 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.696e-7■□□□□ 9.3
U2AF1Q01081 HNRNPH1-221ENST00000513230 248 ntTSL 330.36■■■□□ 2.459e-9■□□□□ 9.3
U2AF1Q01081 HNRNPH1-242ENST00000522256 492 ntTSL 420.51■□□□□ 0.879e-9■□□□□ 9.3
U2AF1Q01081 RNU6-1-201ENST00000383898 107 ntBASIC3.67□□□□□ -1.822e-13■□□□□ 9.3
U2AF1Q01081 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.545e-8■□□□□ 9.3
U2AF1Q01081 CCNL2-205ENST00000425598 661 ntTSL 527.98■■■□□ 2.077e-12■□□□□ 9.2
U2AF1Q01081 CCNL2-219ENST00000497013 548 ntTSL 221.36■■□□□ 1.017e-12■□□□□ 9.2
U2AF1Q01081 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.293e-9■□□□□ 9.2
U2AF1Q01081 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.643e-9■□□□□ 9.2
U2AF1Q01081 AL132780.3-201ENST00000555074 835 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.183e-9■□□□□ 9.2
U2AF1Q01081 AJUBA-206ENST00000553911 567 ntTSL 512.45□□□□□ -0.423e-9■□□□□ 9.2
U2AF1Q01081 AJUBA-203ENST00000397388 2648 ntTSL 2 BASIC11.97□□□□□ -0.493e-9■□□□□ 9.2
U2AF1Q01081 AJUBA-204ENST00000553592 418 ntTSL 59.79□□□□□ -0.843e-9■□□□□ 9.2
U2AF1Q01081 AJUBA-208ENST00000556731 651 ntTSL 49.79□□□□□ -0.843e-9■□□□□ 9.2
U2AF1Q01081 SNHG16-203ENST00000586846 582 ntTSL 423.72■■□□□ 1.392e-6■□□□□ 9.2
U2AF1Q01081 SNHG16-205ENST00000587743 2665 nt20.27■□□□□ 0.832e-6■□□□□ 9.2
U2AF1Q01081 SNHG16-208ENST00000591956 556 ntTSL 215.19■□□□□ 0.022e-6■□□□□ 9.2
U2AF1Q01081 SNHG16-204ENST00000586942 568 ntTSL 4 BASIC13.61□□□□□ -0.232e-6■□□□□ 9.2
U2AF1Q01081 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC22.56■■□□□ 1.27e-8■□□□□ 9.2
U2AF1Q01081 NPEPL1-205ENST00000527081 2061 ntTSL 222.22■■□□□ 1.151e-8■□□□□ 9.2
U2AF1Q01081 NPEPL1-202ENST00000525068 768 ntTSL 220.19■□□□□ 0.821e-8■□□□□ 9.2
U2AF1Q01081 UBAP2L-209ENST00000437652 911 ntTSL 334.96■■■■□ 3.192e-7■□□□□ 9.2
U2AF1Q01081 UBAP2L-205ENST00000412596 980 ntTSL 534.42■■■■□ 3.12e-7■□□□□ 9.2
U2AF1Q01081 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.62e-7■□□□□ 9.2
U2AF1Q01081 SEMA4C-202ENST00000442264 817 ntTSL 327.31■■□□□ 1.964e-18■□□□□ 9.2
U2AF1Q01081 TCERG1-207ENST00000507175 1984 ntTSL 224.23■■□□□ 1.472e-7■□□□□ 9.2
U2AF1Q01081 UBAP2L-211ENST00000456325 812 ntTSL 323.43■■□□□ 1.342e-7■□□□□ 9.2
U2AF1Q01081 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.944e-18■□□□□ 9.2
U2AF1Q01081 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.762e-7■□□□□ 9.2
U2AF1Q01081 SRP14-202ENST00000558243 770 ntTSL 519.77■□□□□ 0.762e-7■□□□□ 9.2
U2AF1Q01081 SEMA4C-203ENST00000449330 839 ntTSL 319.55■□□□□ 0.724e-18■□□□□ 9.2
U2AF1Q01081 DCAF8-212ENST00000476033 945 ntTSL 218.69■□□□□ 0.581e-9■□□□□ 9.2
U2AF1Q01081 UBAP2L-204ENST00000368504 1120 ntTSL 518.39■□□□□ 0.532e-7■□□□□ 9.2
U2AF1Q01081 SRP14-204ENST00000558720 780 ntTSL 2 BASIC17.89■□□□□ 0.452e-7■□□□□ 9.2
U2AF1Q01081 DCAF8-215ENST00000490368 876 ntTSL 317.75■□□□□ 0.431e-9■□□□□ 9.2
U2AF1Q01081 SRP14-208ENST00000560773 468 ntTSL 3 BASIC17.34■□□□□ 0.372e-7■□□□□ 9.2
U2AF1Q01081 SEMA4C-206ENST00000482925 3776 ntTSL 217.17■□□□□ 0.344e-18■□□□□ 9.2
U2AF1Q01081 SRP14-203ENST00000558527 791 ntTSL 217.1■□□□□ 0.332e-7■□□□□ 9.2
U2AF1Q01081 TCERG1-202ENST00000394421 3633 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.072e-7■□□□□ 9.2
U2AF1Q01081 DCAF8-214ENST00000481831 1881 ntTSL 214.65□□□□□ -0.061e-9■□□□□ 9.2
U2AF1Q01081 TCERG1-201ENST00000296702 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.12e-7■□□□□ 9.2
U2AF1Q01081 SRP14-205ENST00000559081 578 ntTSL 2 BASIC14.23□□□□□ -0.132e-7■□□□□ 9.2
U2AF1Q01081 DCAF8-213ENST00000477163 513 ntTSL 314.17□□□□□ -0.141e-9■□□□□ 9.2
U2AF1Q01081 TCERG1-216ENST00000549332 3518 ntTSL 514.09□□□□□ -0.152e-7■□□□□ 9.2
U2AF1Q01081 DCAF8-217ENST00000497354 738 ntTSL 512.09□□□□□ -0.471e-9■□□□□ 9.2
U2AF1Q01081 SRP14-207ENST00000559475 463 ntTSL 211.97□□□□□ -0.492e-7■□□□□ 9.2
U2AF1Q01081 TCERG1-210ENST00000510724 583 ntTSL 311.37□□□□□ -0.592e-7■□□□□ 9.2
U2AF1Q01081 SRP14-206ENST00000559439 743 ntTSL 39.14□□□□□ -0.952e-7■□□□□ 9.2
U2AF1Q01081 TCERG1-212ENST00000513298 711 ntTSL 35.59□□□□□ -1.512e-7■□□□□ 9.2
U2AF1Q01081 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC25.14■■□□□ 1.614e-7■□□□□ 9.2
U2AF1Q01081 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC22.43■■□□□ 1.184e-7■□□□□ 9.2
U2AF1Q01081 RPS6KB1-205ENST00000472940 2808 ntTSL 218.66■□□□□ 0.584e-7■□□□□ 9.2
U2AF1Q01081 RPS6KB1-202ENST00000393021 5479 ntTSL 2 BASIC15.83■□□□□ 0.124e-7■□□□□ 9.2
U2AF1Q01081 RPS6KB1-201ENST00000225577 5375 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.354e-7■□□□□ 9.2
U2AF1Q01081 DPP7-211ENST00000485456 968 ntTSL 532.5■■■□□ 2.792e-6■□□□□ 9.2
U2AF1Q01081 DPP7-205ENST00000472306 919 ntTSL 530.09■■■□□ 2.412e-6■□□□□ 9.2
U2AF1Q01081 DPP7-210ENST00000483783 958 ntTSL 229.03■■■□□ 2.242e-6■□□□□ 9.2
U2AF1Q01081 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.182e-6■□□□□ 9.2
U2AF1Q01081 GPAA1-207ENST00000526341 557 ntTSL 527.52■■■□□ 22e-6■□□□□ 9.2
U2AF1Q01081 GPAA1-211ENST00000529503 878 ntTSL 527.52■■■□□ 22e-6■□□□□ 9.2
U2AF1Q01081 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC27.37■■□□□ 1.972e-6■□□□□ 9.2
U2AF1Q01081 GPAA1-210ENST00000528073 986 ntTSL 326.9■■□□□ 1.92e-6■□□□□ 9.2
Retrieved 100 of 10,096 protein–RNA pairs in 238.4 ms