Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 LAMB1-205ENST00000439976 703 ntTSL 521.7■■□□□ 1.068e-7■□□□□ 9.4
U2AF1Q01081 LAMB1-202ENST00000393559 550 ntTSL 218.23■□□□□ 0.518e-7■□□□□ 9.4
U2AF1Q01081 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.368e-7■□□□□ 9.4
U2AF1Q01081 LAMB1-203ENST00000393560 2806 ntTSL 1 (best) BASIC13.18□□□□□ -0.38e-7■□□□□ 9.4
U2AF1Q01081 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.949e-6■□□□□ 9.4
U2AF1Q01081 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.469e-6■□□□□ 9.4
U2AF1Q01081 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.139e-6■□□□□ 9.4
U2AF1Q01081 EIF4G2-218ENST00000531416 1969 ntTSL 221.04■□□□□ 0.969e-6■□□□□ 9.4
U2AF1Q01081 KPNB1-205ENST00000577918 859 ntTSL 319.91■□□□□ 0.789e-6■□□□□ 9.4
U2AF1Q01081 RPS14-205ENST00000519690 3119 ntTSL 219.83■□□□□ 0.769e-6■□□□□ 9.4
U2AF1Q01081 EIF4G2-220ENST00000531647 579 ntTSL 417.11■□□□□ 0.339e-6■□□□□ 9.4
U2AF1Q01081 SLTM-222ENST00000560494 674 ntTSL 316.83■□□□□ 0.289e-6■□□□□ 9.4
U2AF1Q01081 RPS14-207ENST00000521466 592 ntAPPRIS P1 TSL 516.46■□□□□ 0.239e-6■□□□□ 9.4
U2AF1Q01081 SLTM-203ENST00000432750 2383 ntTSL 515.89■□□□□ 0.139e-6■□□□□ 9.4
U2AF1Q01081 RPS14-204ENST00000518139 669 ntTSL 315.58■□□□□ 0.089e-6■□□□□ 9.4
U2AF1Q01081 RPS14-202ENST00000401695 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.029e-6■□□□□ 9.4
U2AF1Q01081 SRSF7-206ENST00000431066 1847 ntTSL 514.63□□□□□ -0.077e-10■□□□□ 9.4
U2AF1Q01081 SRSF7-201ENST00000313117 2489 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.17e-10■□□□□ 9.4
U2AF1Q01081 STIL-202ENST00000360380 5225 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.19e-6■□□□□ 9.4
U2AF1Q01081 SRSF7-208ENST00000443213 1903 ntTSL 514.15□□□□□ -0.147e-10■□□□□ 9.4
U2AF1Q01081 SRSF7-209ENST00000446327 2453 ntTSL 2 BASIC13.51□□□□□ -0.257e-10■□□□□ 9.4
U2AF1Q01081 SLTM-209ENST00000493062 987 ntTSL 213.51□□□□□ -0.259e-6■□□□□ 9.4
U2AF1Q01081 SRSF7-205ENST00000425941 1944 ntTSL 513.2□□□□□ -0.37e-10■□□□□ 9.4
U2AF1Q01081 KPNB1-202ENST00000535458 3163 ntTSL 2 BASIC11.33□□□□□ -0.69e-6■□□□□ 9.4
U2AF1Q01081 SRSF7-204ENST00000425778 2857 ntTSL 211.32□□□□□ -0.67e-10■□□□□ 9.4
U2AF1Q01081 KPNB1-211ENST00000582097 2347 ntTSL 211.27□□□□□ -0.619e-6■□□□□ 9.4
U2AF1Q01081 STIL-209ENST00000447475 2984 ntAPPRIS ALT2 TSL 1 (best)10.53□□□□□ -0.729e-6■□□□□ 9.4
U2AF1Q01081 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC10.18□□□□□ -0.787e-10■□□□□ 9.4
U2AF1Q01081 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC9.27□□□□□ -0.939e-6■□□□□ 9.4
U2AF1Q01081 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.999e-6■□□□□ 9.4
U2AF1Q01081 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.999e-6■□□□□ 9.4
U2AF1Q01081 THOC2-205ENST00000432353 3188 ntTSL 1 (best)7.47□□□□□ -1.219e-6■□□□□ 9.4
U2AF1Q01081 THOC2-209ENST00000448128 1365 ntTSL 57.28□□□□□ -1.249e-6■□□□□ 9.4
U2AF1Q01081 THOC2-203ENST00000416618 657 ntTSL 57.11□□□□□ -1.279e-6■□□□□ 9.4
U2AF1Q01081 THOC2-219ENST00000497887 768 ntTSL 37.09□□□□□ -1.279e-6■□□□□ 9.4
U2AF1Q01081 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.359e-6■□□□□ 9.4
U2AF1Q01081 THOC2-215ENST00000464992 902 ntTSL 56.53□□□□□ -1.369e-6■□□□□ 9.4
U2AF1Q01081 THOC2-218ENST00000496830 1013 ntTSL 25.94□□□□□ -1.469e-6■□□□□ 9.4
U2AF1Q01081 SRSF7-212ENST00000487773 637 ntTSL 55.24□□□□□ -1.577e-10■□□□□ 9.4
U2AF1Q01081 THOC2-208ENST00000441692 4364 ntTSL 55.11□□□□□ -1.599e-6■□□□□ 9.4
U2AF1Q01081 SRSF7-211ENST00000477635 680 ntTSL 24.97□□□□□ -1.617e-10■□□□□ 9.4
U2AF1Q01081 SRSF7-207ENST00000432873 603 ntTSL 34.39□□□□□ -1.717e-10■□□□□ 9.4
U2AF1Q01081 SRSF7-210ENST00000452806 747 ntTSL 23.56□□□□□ -1.847e-10■□□□□ 9.4
U2AF1Q01081 YDJC-205ENST00000468686 1423 ntTSL 1 (best)28.39■■■□□ 2.142e-8■□□□□ 9.4
U2AF1Q01081 YDJC-207ENST00000482998 1388 ntTSL 526.38■■□□□ 1.812e-8■□□□□ 9.4
U2AF1Q01081 MICALL2-204ENST00000467394 2080 ntTSL 226.14■■□□□ 1.772e-8■□□□□ 9.4
U2AF1Q01081 MICALL2-211ENST00000487156 874 ntTSL 525.77■■□□□ 1.722e-8■□□□□ 9.4
U2AF1Q01081 YDJC-204ENST00000464015 1613 ntTSL 1 (best)25.45■■□□□ 1.662e-8■□□□□ 9.4
U2AF1Q01081 YDJC-206ENST00000473985 1494 ntTSL 525.15■■□□□ 1.622e-8■□□□□ 9.4
U2AF1Q01081 YDJC-203ENST00000415762 1410 ntTSL 1 (best)24.4■■□□□ 1.52e-8■□□□□ 9.4
U2AF1Q01081 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.422e-8■□□□□ 9.4
U2AF1Q01081 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC22.9■■□□□ 1.262e-8■□□□□ 9.4
U2AF1Q01081 MICALL2-208ENST00000472100 5248 ntTSL 222.62■■□□□ 1.212e-8■□□□□ 9.4
U2AF1Q01081 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.922e-8■□□□□ 9.4
U2AF1Q01081 MICALL2-202ENST00000413446 3046 ntTSL 217.51■□□□□ 0.392e-8■□□□□ 9.4
U2AF1Q01081 VEGFA-211ENST00000476772 1683 ntTSL 1 (best)38.32■■■■□ 3.722e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC35.77■■■■□ 3.322e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC35.28■■■■□ 3.242e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC34.84■■■■□ 3.172e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC33.87■■■■□ 3.012e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-220ENST00000519767 970 ntTSL 1 (best)33.87■■■■□ 3.012e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC33.72■■■□□ 2.992e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC33.72■■■□□ 2.992e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC33.72■■■□□ 2.992e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC33.72■■■□□ 2.992e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC33.72■■■□□ 2.992e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC33.72■■■□□ 2.992e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC33.72■■■□□ 2.992e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC33.72■■■□□ 2.992e-10■□□□□ 9.4
U2AF1Q01081 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC32.75■■■□□ 2.832e-10■□□□□ 9.4
U2AF1Q01081 HPN-209ENST00000600675 551 ntTSL 430.53■■■□□ 2.486e-7■□□□□ 9.4
U2AF1Q01081 HPN-207ENST00000599363 1828 ntTSL 527.7■■■□□ 2.026e-7■□□□□ 9.4
U2AF1Q01081 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC26.77■■□□□ 1.882e-10■□□□□ 9.4
U2AF1Q01081 HPN-204ENST00000593305 2175 ntTSL 225.21■■□□□ 1.636e-7■□□□□ 9.4
U2AF1Q01081 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC24.4■■□□□ 1.52e-10■□□□□ 9.4
U2AF1Q01081 HPN-203ENST00000541345 1820 ntTSL 223.45■■□□□ 1.346e-7■□□□□ 9.4
U2AF1Q01081 RECQL5-212ENST00000580707 948 ntTSL 323.41■■□□□ 1.346e-7■□□□□ 9.4
U2AF1Q01081 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.196e-7■□□□□ 9.4
U2AF1Q01081 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.152e-10■□□□□ 9.4
U2AF1Q01081 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.046e-7■□□□□ 9.4
U2AF1Q01081 HPN-205ENST00000596662 584 ntTSL 421.14■□□□□ 0.976e-7■□□□□ 9.4
U2AF1Q01081 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.861e-19■□□□□ 9.4
U2AF1Q01081 HPN-206ENST00000597419 1212 ntTSL 5 BASIC19.13■□□□□ 0.656e-7■□□□□ 9.4
U2AF1Q01081 RECQL5-205ENST00000443199 3089 ntTSL 1 (best)17.22■□□□□ 0.356e-7■□□□□ 9.4
U2AF1Q01081 RECQL5-204ENST00000423245 3576 ntTSL 1 (best) BASIC16.28■□□□□ 0.26e-7■□□□□ 9.4
U2AF1Q01081 RECQL5-201ENST00000317905 3704 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.096e-7■□□□□ 9.4
U2AF1Q01081 RECQL5-219ENST00000585205 519 ntTSL 214.23□□□□□ -0.136e-7■□□□□ 9.4
U2AF1Q01081 ATXN1-202ENST00000436367 10587 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.516e-7■□□□□ 9.4
U2AF1Q01081 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.646e-7■□□□□ 9.4
U2AF1Q01081 ATXN1-204ENST00000473388 1569 ntTSL 1 (best)9.88□□□□□ -0.836e-7■□□□□ 9.4
U2AF1Q01081 ATXN1-205ENST00000479680 568 ntTSL 49.41□□□□□ -0.96e-7■□□□□ 9.4
U2AF1Q01081 ATXN1-210ENST00000498374 1648 ntTSL 1 (best)9.27□□□□□ -0.926e-7■□□□□ 9.4
U2AF1Q01081 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -16e-7■□□□□ 9.4
U2AF1Q01081 ATXN1-207ENST00000483954 744 ntTSL 36.52□□□□□ -1.376e-7■□□□□ 9.4
U2AF1Q01081 ATXN1-208ENST00000492857 647 ntTSL 46.18□□□□□ -1.426e-7■□□□□ 9.4
U2AF1Q01081 ATXN1-203ENST00000467008 3362 ntTSL 1 (best)3.76□□□□□ -1.816e-7■□□□□ 9.4
U2AF1Q01081 TAOK2-201ENST00000279394 4246 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.14e-6■□□□□ 9.4
U2AF1Q01081 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.435e-8■□□□□ 9.4
U2AF1Q01081 NOP56-216ENST00000492135 1143 ntTSL 1 (best)19.14■□□□□ 0.655e-8■□□□□ 9.4
U2AF1Q01081 NOP56-219ENST00000612233 2980 nt17.72■□□□□ 0.435e-8■□□□□ 9.4
Retrieved 100 of 10,096 protein–RNA pairs in 137.9 ms