Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA2Q9Y261 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA2Q9Y261 AC100797.4-201ENST00000631653 1827 ntBASIC20.49■□□□□ 0.87
FOXA2Q9Y261 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
FOXA2Q9Y261 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
FOXA2Q9Y261 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA2Q9Y261 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA2Q9Y261 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA2Q9Y261 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA2Q9Y261 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
FOXA2Q9Y261 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.48■□□□□ 0.87
FOXA2Q9Y261 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
FOXA2Q9Y261 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXA2Q9Y261 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
FOXA2Q9Y261 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXA2Q9Y261 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
FOXA2Q9Y261 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
FOXA2Q9Y261 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA2Q9Y261 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA2Q9Y261 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA2Q9Y261 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.46■□□□□ 0.87
FOXA2Q9Y261 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA2Q9Y261 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.45■□□□□ 0.86
FOXA2Q9Y261 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
FOXA2Q9Y261 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.43■□□□□ 0.86
FOXA2Q9Y261 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA2Q9Y261 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA2Q9Y261 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA2Q9Y261 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.43■□□□□ 0.86
FOXA2Q9Y261 AP002414.2-202ENST00000590929 1450 ntBASIC20.43■□□□□ 0.86
FOXA2Q9Y261 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA2Q9Y261 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA2Q9Y261 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA2Q9Y261 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA2Q9Y261 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
FOXA2Q9Y261 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.41■□□□□ 0.86
FOXA2Q9Y261 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.41■□□□□ 0.86
FOXA2Q9Y261 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
FOXA2Q9Y261 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
FOXA2Q9Y261 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA2Q9Y261 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
FOXA2Q9Y261 DUX4L29-201ENST00000425409 679 ntBASIC20.4■□□□□ 0.86
FOXA2Q9Y261 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA2Q9Y261 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
FOXA2Q9Y261 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.39■□□□□ 0.85
FOXA2Q9Y261 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.39■□□□□ 0.85
FOXA2Q9Y261 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXA2Q9Y261 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXA2Q9Y261 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.38■□□□□ 0.85
FOXA2Q9Y261 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA2Q9Y261 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.38■□□□□ 0.85
FOXA2Q9Y261 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA2Q9Y261 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA2Q9Y261 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
FOXA2Q9Y261 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.37■□□□□ 0.85
FOXA2Q9Y261 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.37■□□□□ 0.85
FOXA2Q9Y261 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA2Q9Y261 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA2Q9Y261 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXA2Q9Y261 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.34■□□□□ 0.85
FOXA2Q9Y261 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA2Q9Y261 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.34■□□□□ 0.85
FOXA2Q9Y261 AC021231.2-201ENST00000594613 730 ntBASIC20.34■□□□□ 0.85
FOXA2Q9Y261 AC135983.2-203ENST00000454486 1613 ntBASIC20.34■□□□□ 0.85
FOXA2Q9Y261 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA2Q9Y261 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXA2Q9Y261 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.32■□□□□ 0.84
FOXA2Q9Y261 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
FOXA2Q9Y261 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms