Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Prpf40aQ9R1C7 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Prpf40aQ9R1C7 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Prpf40aQ9R1C7 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC25.48■■□□□ 1.67
Prpf40aQ9R1C7 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
Prpf40aQ9R1C7 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Prpf40aQ9R1C7 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Prpf40aQ9R1C7 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Prpf40aQ9R1C7 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Prpf40aQ9R1C7 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Prpf40aQ9R1C7 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Prpf40aQ9R1C7 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Prpf40aQ9R1C7 AC122428.3-201ENSMUST00000215551 2290 ntBASIC25.43■■□□□ 1.66
Prpf40aQ9R1C7 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Prpf40aQ9R1C7 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
Prpf40aQ9R1C7 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Prpf40aQ9R1C7 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Prpf40aQ9R1C7 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Prpf40aQ9R1C7 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Prpf40aQ9R1C7 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Prpf40aQ9R1C7 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Prpf40aQ9R1C7 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
Prpf40aQ9R1C7 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
Prpf40aQ9R1C7 Particl-201ENSMUST00000205370 1560 ntBASIC25.37■■□□□ 1.65
Prpf40aQ9R1C7 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
Prpf40aQ9R1C7 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Prpf40aQ9R1C7 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Prpf40aQ9R1C7 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Prpf40aQ9R1C7 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
Prpf40aQ9R1C7 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Prpf40aQ9R1C7 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC25.33■■□□□ 1.65
Prpf40aQ9R1C7 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC25.33■■□□□ 1.65
Prpf40aQ9R1C7 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
Prpf40aQ9R1C7 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Prpf40aQ9R1C7 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Prpf40aQ9R1C7 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Prpf40aQ9R1C7 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Prpf40aQ9R1C7 Gm7432-201ENSMUST00000210343 879 ntBASIC25.31■■□□□ 1.64
Prpf40aQ9R1C7 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Prpf40aQ9R1C7 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Prpf40aQ9R1C7 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC25.3■■□□□ 1.64
Prpf40aQ9R1C7 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC25.3■■□□□ 1.64
Prpf40aQ9R1C7 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Prpf40aQ9R1C7 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC25.29■■□□□ 1.64
Prpf40aQ9R1C7 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC25.29■■□□□ 1.64
Prpf40aQ9R1C7 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Prpf40aQ9R1C7 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
Prpf40aQ9R1C7 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
Prpf40aQ9R1C7 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
Prpf40aQ9R1C7 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Prpf40aQ9R1C7 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Prpf40aQ9R1C7 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC25.27■■□□□ 1.64
Prpf40aQ9R1C7 AC131739.1-201ENSMUST00000221692 1245 ntBASIC25.27■■□□□ 1.64
Prpf40aQ9R1C7 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Prpf40aQ9R1C7 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Prpf40aQ9R1C7 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Prpf40aQ9R1C7 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Prpf40aQ9R1C7 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Prpf40aQ9R1C7 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Prpf40aQ9R1C7 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
Prpf40aQ9R1C7 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
Prpf40aQ9R1C7 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Prpf40aQ9R1C7 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Prpf40aQ9R1C7 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Prpf40aQ9R1C7 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Prpf40aQ9R1C7 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Prpf40aQ9R1C7 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Prpf40aQ9R1C7 Gm37847-201ENSMUST00000192163 1497 ntBASIC25.22■■□□□ 1.63
Prpf40aQ9R1C7 Gm31748-201ENSMUST00000194938 1497 ntBASIC25.22■■□□□ 1.63
Prpf40aQ9R1C7 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Prpf40aQ9R1C7 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Prpf40aQ9R1C7 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC25.22■■□□□ 1.63
Prpf40aQ9R1C7 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Prpf40aQ9R1C7 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
Prpf40aQ9R1C7 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
Prpf40aQ9R1C7 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
Prpf40aQ9R1C7 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.63
Prpf40aQ9R1C7 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Prpf40aQ9R1C7 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC25.19■■□□□ 1.62
Prpf40aQ9R1C7 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Prpf40aQ9R1C7 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Prpf40aQ9R1C7 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Prpf40aQ9R1C7 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Prpf40aQ9R1C7 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Prpf40aQ9R1C7 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Prpf40aQ9R1C7 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
Prpf40aQ9R1C7 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
Prpf40aQ9R1C7 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Prpf40aQ9R1C7 Gm11599-201ENSMUST00000118720 878 ntBASIC25.17■■□□□ 1.62
Prpf40aQ9R1C7 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Prpf40aQ9R1C7 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Prpf40aQ9R1C7 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Prpf40aQ9R1C7 Gm37136-201ENSMUST00000194368 194 ntBASIC25.16■■□□□ 1.62
Prpf40aQ9R1C7 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC25.16■■□□□ 1.62
Prpf40aQ9R1C7 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Prpf40aQ9R1C7 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Prpf40aQ9R1C7 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Prpf40aQ9R1C7 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC25.15■■□□□ 1.62
Prpf40aQ9R1C7 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Prpf40aQ9R1C7 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
Retrieved 100 of 76,532 protein–RNA pairs in 110.6 ms