Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC32.13■■■□□ 2.73
USP44Q9H0E7 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
USP44Q9H0E7 AC110285.7-201ENST00000624417 1536 ntBASIC32.12■■■□□ 2.73
USP44Q9H0E7 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC32.12■■■□□ 2.73
USP44Q9H0E7 HLA-V-202ENST00000446817 847 ntBASIC32.12■■■□□ 2.73
USP44Q9H0E7 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC32.11■■■□□ 2.73
USP44Q9H0E7 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC32.1■■■□□ 2.73
USP44Q9H0E7 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC32.1■■■□□ 2.73
USP44Q9H0E7 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC32.1■■■□□ 2.73
USP44Q9H0E7 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
USP44Q9H0E7 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
USP44Q9H0E7 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
USP44Q9H0E7 PEX7-203ENST00000541292 945 ntTSL 5 BASIC32.08■■■□□ 2.73
USP44Q9H0E7 CHST11-202ENST00000546689 756 ntTSL 2 BASIC32.08■■■□□ 2.73
USP44Q9H0E7 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC32.08■■■□□ 2.73
USP44Q9H0E7 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
USP44Q9H0E7 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
USP44Q9H0E7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
USP44Q9H0E7 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP44Q9H0E7 METRNL-202ENST00000570778 967 ntTSL 5 BASIC32.04■■■□□ 2.72
USP44Q9H0E7 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
USP44Q9H0E7 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
USP44Q9H0E7 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
USP44Q9H0E7 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
USP44Q9H0E7 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC32.02■■■□□ 2.72
USP44Q9H0E7 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC32.02■■■□□ 2.72
USP44Q9H0E7 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC32.02■■■□□ 2.72
USP44Q9H0E7 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
USP44Q9H0E7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.71
USP44Q9H0E7 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC32.01■■■□□ 2.71
USP44Q9H0E7 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC32■■■□□ 2.71
USP44Q9H0E7 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
USP44Q9H0E7 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC32■■■□□ 2.71
USP44Q9H0E7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
USP44Q9H0E7 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
USP44Q9H0E7 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
USP44Q9H0E7 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
USP44Q9H0E7 MIR4449-201ENST00000578365 66 ntBASIC31.98■■■□□ 2.71
USP44Q9H0E7 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP44Q9H0E7 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.97■■■□□ 2.71
USP44Q9H0E7 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP44Q9H0E7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC31.97■■■□□ 2.71
USP44Q9H0E7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
USP44Q9H0E7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
USP44Q9H0E7 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC31.95■■■□□ 2.71
USP44Q9H0E7 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.95■■■□□ 2.71
USP44Q9H0E7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC31.95■■■□□ 2.7
USP44Q9H0E7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
USP44Q9H0E7 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
USP44Q9H0E7 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
USP44Q9H0E7 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
USP44Q9H0E7 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP44Q9H0E7 DRD5P2-201ENST00000421395 2012 ntBASIC31.93■■■□□ 2.7
USP44Q9H0E7 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP44Q9H0E7 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP44Q9H0E7 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
USP44Q9H0E7 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
USP44Q9H0E7 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
USP44Q9H0E7 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.92■■■□□ 2.7
USP44Q9H0E7 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
USP44Q9H0E7 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
USP44Q9H0E7 AP002414.2-202ENST00000590929 1450 ntBASIC31.91■■■□□ 2.7
USP44Q9H0E7 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
USP44Q9H0E7 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC31.9■■■□□ 2.7
USP44Q9H0E7 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
USP44Q9H0E7 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
USP44Q9H0E7 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
USP44Q9H0E7 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC31.89■■■□□ 2.7
USP44Q9H0E7 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
USP44Q9H0E7 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.88■■■□□ 2.69
USP44Q9H0E7 AC008813.1-201ENST00000536597 885 ntBASIC31.87■■■□□ 2.69
USP44Q9H0E7 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC31.87■■■□□ 2.69
USP44Q9H0E7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC31.87■■■□□ 2.69
USP44Q9H0E7 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
USP44Q9H0E7 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
USP44Q9H0E7 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
USP44Q9H0E7 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
USP44Q9H0E7 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
USP44Q9H0E7 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC31.85■■■□□ 2.69
USP44Q9H0E7 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC31.84■■■□□ 2.69
USP44Q9H0E7 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC31.84■■■□□ 2.69
USP44Q9H0E7 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP44Q9H0E7 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP44Q9H0E7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
USP44Q9H0E7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP44Q9H0E7 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP44Q9H0E7 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC31.83■■■□□ 2.69
USP44Q9H0E7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP44Q9H0E7 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.82■■■□□ 2.69
USP44Q9H0E7 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
USP44Q9H0E7 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
USP44Q9H0E7 PROC-203ENST00000409048 1586 ntTSL 5 BASIC31.81■■■□□ 2.68
USP44Q9H0E7 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
USP44Q9H0E7 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
USP44Q9H0E7 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
USP44Q9H0E7 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC31.81■■■□□ 2.68
USP44Q9H0E7 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC31.8■■■□□ 2.68
USP44Q9H0E7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP44Q9H0E7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP44Q9H0E7 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms