Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Cpsf1Q9EPU4 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC32.9■■■□□ 2.86
Cpsf1Q9EPU4 Gm45364-201ENSMUST00000210883 159 ntBASIC32.9■■■□□ 2.86
Cpsf1Q9EPU4 Gm6311-201ENSMUST00000073790 878 ntBASIC32.9■■■□□ 2.86
Cpsf1Q9EPU4 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Cpsf1Q9EPU4 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Cpsf1Q9EPU4 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
Cpsf1Q9EPU4 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC32.88■■■□□ 2.85
Cpsf1Q9EPU4 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
Cpsf1Q9EPU4 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
Cpsf1Q9EPU4 Gm13889-201ENSMUST00000099689 1386 ntBASIC32.88■■■□□ 2.85
Cpsf1Q9EPU4 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
Cpsf1Q9EPU4 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Cpsf1Q9EPU4 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC32.87■■■□□ 2.85
Cpsf1Q9EPU4 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC32.87■■■□□ 2.85
Cpsf1Q9EPU4 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC32.86■■■□□ 2.85
Cpsf1Q9EPU4 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC32.86■■■□□ 2.85
Cpsf1Q9EPU4 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC32.85■■■□□ 2.85
Cpsf1Q9EPU4 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
Cpsf1Q9EPU4 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC32.83■■■□□ 2.85
Cpsf1Q9EPU4 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
Cpsf1Q9EPU4 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC32.83■■■□□ 2.85
Cpsf1Q9EPU4 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC32.82■■■□□ 2.85
Cpsf1Q9EPU4 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Cpsf1Q9EPU4 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Cpsf1Q9EPU4 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
Cpsf1Q9EPU4 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Cpsf1Q9EPU4 Mir3960-201ENSMUST00000198213 73 ntBASIC32.81■■■□□ 2.84
Cpsf1Q9EPU4 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Cpsf1Q9EPU4 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
Cpsf1Q9EPU4 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Cpsf1Q9EPU4 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
Cpsf1Q9EPU4 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
Cpsf1Q9EPU4 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC32.78■■■□□ 2.84
Cpsf1Q9EPU4 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
Cpsf1Q9EPU4 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
Cpsf1Q9EPU4 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
Cpsf1Q9EPU4 Cap2-205ENSMUST00000225824 1634 ntBASIC32.75■■■□□ 2.83
Cpsf1Q9EPU4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC32.75■■■□□ 2.83
Cpsf1Q9EPU4 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Cpsf1Q9EPU4 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC32.74■■■□□ 2.83
Cpsf1Q9EPU4 Gm4799-201ENSMUST00000095396 657 ntBASIC32.74■■■□□ 2.83
Cpsf1Q9EPU4 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
Cpsf1Q9EPU4 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Cpsf1Q9EPU4 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Cpsf1Q9EPU4 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
Cpsf1Q9EPU4 Gm12818-201ENSMUST00000117562 1349 ntBASIC32.71■■■□□ 2.83
Cpsf1Q9EPU4 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
Cpsf1Q9EPU4 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC32.7■■■□□ 2.83
Cpsf1Q9EPU4 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
Cpsf1Q9EPU4 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC32.69■■■□□ 2.82
Cpsf1Q9EPU4 Pkd1-207ENSMUST00000228550 1050 ntBASIC32.69■■■□□ 2.82
Cpsf1Q9EPU4 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Cpsf1Q9EPU4 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
Cpsf1Q9EPU4 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
Cpsf1Q9EPU4 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Cpsf1Q9EPU4 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC32.69■■■□□ 2.82
Cpsf1Q9EPU4 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC32.68■■■□□ 2.82
Cpsf1Q9EPU4 AC122317.2-201ENSMUST00000218708 1248 ntBASIC32.68■■■□□ 2.82
Cpsf1Q9EPU4 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC32.68■■■□□ 2.82
Cpsf1Q9EPU4 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
Cpsf1Q9EPU4 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
Cpsf1Q9EPU4 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC32.68■■■□□ 2.82
Cpsf1Q9EPU4 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC32.68■■■□□ 2.82
Cpsf1Q9EPU4 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC32.67■■■□□ 2.82
Cpsf1Q9EPU4 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Cpsf1Q9EPU4 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
Cpsf1Q9EPU4 Gm9812-201ENSMUST00000061934 968 ntBASIC32.66■■■□□ 2.82
Cpsf1Q9EPU4 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Cpsf1Q9EPU4 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Cpsf1Q9EPU4 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC32.65■■■□□ 2.82
Cpsf1Q9EPU4 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC32.65■■■□□ 2.82
Cpsf1Q9EPU4 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC32.64■■■□□ 2.82
Cpsf1Q9EPU4 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Cpsf1Q9EPU4 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Cpsf1Q9EPU4 Gm4419-202ENSMUST00000226239 1431 ntBASIC32.63■■■□□ 2.81
Cpsf1Q9EPU4 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Cpsf1Q9EPU4 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
Cpsf1Q9EPU4 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC32.63■■■□□ 2.81
Cpsf1Q9EPU4 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Cpsf1Q9EPU4 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Cpsf1Q9EPU4 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC32.62■■■□□ 2.81
Cpsf1Q9EPU4 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC32.61■■■□□ 2.81
Cpsf1Q9EPU4 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Cpsf1Q9EPU4 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC32.61■■■□□ 2.81
Cpsf1Q9EPU4 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Cpsf1Q9EPU4 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
Cpsf1Q9EPU4 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC32.59■■■□□ 2.81
Cpsf1Q9EPU4 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Cpsf1Q9EPU4 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Cpsf1Q9EPU4 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Cpsf1Q9EPU4 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC32.56■■■□□ 2.8
Cpsf1Q9EPU4 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Cpsf1Q9EPU4 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Cpsf1Q9EPU4 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Cpsf1Q9EPU4 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
Cpsf1Q9EPU4 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Cpsf1Q9EPU4 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC32.53■■■□□ 2.8
Cpsf1Q9EPU4 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC32.53■■■□□ 2.8
Cpsf1Q9EPU4 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Retrieved 100 of 76,532 protein–RNA pairs in 68.6 ms