Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC31.47■■■□□ 2.63
RTFDC1Q9BY42 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.47■■■□□ 2.63
RTFDC1Q9BY42 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
RTFDC1Q9BY42 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
RTFDC1Q9BY42 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.45■■■□□ 2.63
RTFDC1Q9BY42 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
RTFDC1Q9BY42 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
RTFDC1Q9BY42 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.44■■■□□ 2.62
RTFDC1Q9BY42 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
RTFDC1Q9BY42 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
RTFDC1Q9BY42 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.43■■■□□ 2.62
RTFDC1Q9BY42 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
RTFDC1Q9BY42 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RTFDC1Q9BY42 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC31.42■■■□□ 2.62
RTFDC1Q9BY42 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.41■■■□□ 2.62
RTFDC1Q9BY42 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
RTFDC1Q9BY42 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RTFDC1Q9BY42 KRT18P60-201ENST00000312876 1297 ntBASIC31.4■■■□□ 2.62
RTFDC1Q9BY42 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC31.4■■■□□ 2.62
RTFDC1Q9BY42 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RTFDC1Q9BY42 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
RTFDC1Q9BY42 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC31.39■■■□□ 2.62
RTFDC1Q9BY42 ECEL1P2-201ENST00000461596 1295 ntBASIC31.39■■■□□ 2.62
RTFDC1Q9BY42 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.39■■■□□ 2.62
RTFDC1Q9BY42 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.39■■■□□ 2.62
RTFDC1Q9BY42 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
RTFDC1Q9BY42 GFER-205ENST00000569451 517 ntTSL 5 BASIC31.38■■■□□ 2.61
RTFDC1Q9BY42 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
RTFDC1Q9BY42 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
RTFDC1Q9BY42 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
RTFDC1Q9BY42 TSPY13P-201ENST00000338964 914 ntBASIC31.36■■■□□ 2.61
RTFDC1Q9BY42 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
RTFDC1Q9BY42 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.36■■■□□ 2.61
RTFDC1Q9BY42 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
RTFDC1Q9BY42 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RTFDC1Q9BY42 AC004987.1-201ENST00000428627 508 ntBASIC31.35■■■□□ 2.61
RTFDC1Q9BY42 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
RTFDC1Q9BY42 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.35■■■□□ 2.61
RTFDC1Q9BY42 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RTFDC1Q9BY42 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.34■■■□□ 2.61
RTFDC1Q9BY42 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC31.34■■■□□ 2.61
RTFDC1Q9BY42 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
RTFDC1Q9BY42 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.34■■■□□ 2.61
RTFDC1Q9BY42 MEST-211ENST00000437945 1455 ntTSL 5 BASIC31.33■■■□□ 2.61
RTFDC1Q9BY42 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.33■■■□□ 2.61
RTFDC1Q9BY42 ATP5G2P3-201ENST00000429083 425 ntBASIC31.32■■■□□ 2.6
RTFDC1Q9BY42 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
RTFDC1Q9BY42 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
RTFDC1Q9BY42 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
RTFDC1Q9BY42 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
RTFDC1Q9BY42 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC31.3■■■□□ 2.6
RTFDC1Q9BY42 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
RTFDC1Q9BY42 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RTFDC1Q9BY42 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
RTFDC1Q9BY42 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.29■■■□□ 2.6
RTFDC1Q9BY42 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RTFDC1Q9BY42 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RTFDC1Q9BY42 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.29■■■□□ 2.6
RTFDC1Q9BY42 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
RTFDC1Q9BY42 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.29■■■□□ 2.6
RTFDC1Q9BY42 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RTFDC1Q9BY42 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RTFDC1Q9BY42 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.28■■■□□ 2.6
RTFDC1Q9BY42 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
RTFDC1Q9BY42 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC31.27■■■□□ 2.6
RTFDC1Q9BY42 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
RTFDC1Q9BY42 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
RTFDC1Q9BY42 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.26■■■□□ 2.59
RTFDC1Q9BY42 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
RTFDC1Q9BY42 GUK1-208ENST00000366728 842 ntTSL 2 BASIC31.25■■■□□ 2.59
RTFDC1Q9BY42 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.25■■■□□ 2.59
RTFDC1Q9BY42 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RTFDC1Q9BY42 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RTFDC1Q9BY42 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
RTFDC1Q9BY42 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
RTFDC1Q9BY42 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.23■■■□□ 2.59
RTFDC1Q9BY42 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
RTFDC1Q9BY42 AL157400.5-201ENST00000507624 621 ntBASIC31.23■■■□□ 2.59
RTFDC1Q9BY42 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.23■■■□□ 2.59
RTFDC1Q9BY42 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
RTFDC1Q9BY42 AC126177.7-201ENST00000547904 679 ntBASIC31.22■■■□□ 2.59
RTFDC1Q9BY42 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
RTFDC1Q9BY42 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
RTFDC1Q9BY42 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
RTFDC1Q9BY42 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
RTFDC1Q9BY42 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
RTFDC1Q9BY42 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
RTFDC1Q9BY42 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.21■■■□□ 2.59
RTFDC1Q9BY42 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
RTFDC1Q9BY42 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC31.2■■■□□ 2.59
RTFDC1Q9BY42 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
RTFDC1Q9BY42 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
RTFDC1Q9BY42 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
RTFDC1Q9BY42 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.18■■■□□ 2.58
RTFDC1Q9BY42 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.18■■■□□ 2.58
RTFDC1Q9BY42 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.18■■■□□ 2.58
RTFDC1Q9BY42 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
RTFDC1Q9BY42 RARRES2P1-201ENST00000474487 481 ntBASIC31.17■■■□□ 2.58
RTFDC1Q9BY42 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
RTFDC1Q9BY42 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms