Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 RP9P-202ENST00000450133 1212 ntBASIC22.77■■□□□ 1.24
COL12A1Q99715 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC22.77■■□□□ 1.24
COL12A1Q99715 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
COL12A1Q99715 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
COL12A1Q99715 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC22.76■■□□□ 1.23
COL12A1Q99715 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
COL12A1Q99715 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
COL12A1Q99715 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.75■■□□□ 1.23
COL12A1Q99715 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
COL12A1Q99715 AL356441.2-201ENST00000443009 864 ntBASIC22.74■■□□□ 1.23
COL12A1Q99715 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
COL12A1Q99715 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC22.74■■□□□ 1.23
COL12A1Q99715 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
COL12A1Q99715 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
COL12A1Q99715 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
COL12A1Q99715 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC22.72■■□□□ 1.23
COL12A1Q99715 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
COL12A1Q99715 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
COL12A1Q99715 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
COL12A1Q99715 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.72■■□□□ 1.23
COL12A1Q99715 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC22.71■■□□□ 1.23
COL12A1Q99715 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL12A1Q99715 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL12A1Q99715 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL12A1Q99715 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
COL12A1Q99715 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
COL12A1Q99715 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
COL12A1Q99715 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC22.7■■□□□ 1.22
COL12A1Q99715 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.7■■□□□ 1.22
COL12A1Q99715 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
COL12A1Q99715 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.69■■□□□ 1.22
COL12A1Q99715 MIR219A2-201ENST00000608502 1504 ntBASIC22.69■■□□□ 1.22
COL12A1Q99715 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC22.68■■□□□ 1.22
COL12A1Q99715 DUX4L9-201ENST00000449051 1259 ntBASIC22.68■■□□□ 1.22
COL12A1Q99715 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL12A1Q99715 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL12A1Q99715 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL12A1Q99715 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL12A1Q99715 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
COL12A1Q99715 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.68■■□□□ 1.22
COL12A1Q99715 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL12A1Q99715 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
COL12A1Q99715 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
COL12A1Q99715 AC148477.6-201ENST00000623746 465 ntBASIC22.67■■□□□ 1.22
COL12A1Q99715 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL12A1Q99715 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC22.67■■□□□ 1.22
COL12A1Q99715 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL12A1Q99715 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
COL12A1Q99715 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.66■■□□□ 1.22
COL12A1Q99715 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.65■■□□□ 1.22
COL12A1Q99715 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL12A1Q99715 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.65■■□□□ 1.22
COL12A1Q99715 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
COL12A1Q99715 AC010980.1-201ENST00000587192 1142 ntBASIC22.64■■□□□ 1.22
COL12A1Q99715 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
COL12A1Q99715 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC22.64■■□□□ 1.21
COL12A1Q99715 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
COL12A1Q99715 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL12A1Q99715 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL12A1Q99715 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL12A1Q99715 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL12A1Q99715 AC103834.1-201ENST00000520383 144 ntBASIC22.62■■□□□ 1.21
COL12A1Q99715 AC007029.1-201ENST00000604183 313 ntBASIC22.62■■□□□ 1.21
COL12A1Q99715 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL12A1Q99715 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.61■■□□□ 1.21
COL12A1Q99715 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
COL12A1Q99715 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL12A1Q99715 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC22.61■■□□□ 1.21
COL12A1Q99715 BHLHE23-202ENST00000612929 1109 ntBASIC22.61■■□□□ 1.21
COL12A1Q99715 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.61■■□□□ 1.21
COL12A1Q99715 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL12A1Q99715 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
COL12A1Q99715 AC008406.3-201ENST00000620001 1374 ntBASIC22.6■■□□□ 1.21
COL12A1Q99715 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL12A1Q99715 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL12A1Q99715 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL12A1Q99715 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL12A1Q99715 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.59■■□□□ 1.21
COL12A1Q99715 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL12A1Q99715 MIR638-201ENST00000385237 100 ntBASIC22.59■■□□□ 1.21
COL12A1Q99715 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.59■■□□□ 1.21
COL12A1Q99715 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL12A1Q99715 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL12A1Q99715 AC009831.1-201ENST00000580420 1582 ntBASIC22.58■■□□□ 1.21
COL12A1Q99715 AL157400.5-201ENST00000507624 621 ntBASIC22.58■■□□□ 1.21
COL12A1Q99715 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL12A1Q99715 AC133552.2-201ENST00000619106 1032 ntBASIC22.57■■□□□ 1.2
COL12A1Q99715 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL12A1Q99715 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.56■■□□□ 1.2
COL12A1Q99715 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.56■■□□□ 1.2
COL12A1Q99715 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL12A1Q99715 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL12A1Q99715 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL12A1Q99715 AC103724.3-201ENST00000564481 992 ntBASIC22.55■■□□□ 1.2
COL12A1Q99715 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.54■■□□□ 1.2
COL12A1Q99715 ECEL1P2-201ENST00000461596 1295 ntBASIC22.54■■□□□ 1.2
COL12A1Q99715 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
COL12A1Q99715 WHAMMP2-203ENST00000563942 1603 ntBASIC22.54■■□□□ 1.2
COL12A1Q99715 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.54■■□□□ 1.2
COL12A1Q99715 AL592293.1-201ENST00000502889 1188 ntBASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms