Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC26.79■■□□□ 1.88
TTC28Q96AY4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
TTC28Q96AY4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.78■■□□□ 1.88
TTC28Q96AY4 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
TTC28Q96AY4 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.78■■□□□ 1.88
TTC28Q96AY4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
TTC28Q96AY4 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.88
TTC28Q96AY4 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
TTC28Q96AY4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
TTC28Q96AY4 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.76■■□□□ 1.87
TTC28Q96AY4 AC133552.2-201ENST00000619106 1032 ntBASIC26.75■■□□□ 1.87
TTC28Q96AY4 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.75■■□□□ 1.87
TTC28Q96AY4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
TTC28Q96AY4 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
TTC28Q96AY4 DUX4L9-201ENST00000449051 1259 ntBASIC26.74■■□□□ 1.87
TTC28Q96AY4 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC26.74■■□□□ 1.87
TTC28Q96AY4 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.74■■□□□ 1.87
TTC28Q96AY4 AC009831.1-201ENST00000580420 1582 ntBASIC26.73■■□□□ 1.87
TTC28Q96AY4 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
TTC28Q96AY4 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
TTC28Q96AY4 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC26.72■■□□□ 1.87
TTC28Q96AY4 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
TTC28Q96AY4 SPCS2P3-201ENST00000500401 656 ntBASIC26.72■■□□□ 1.87
TTC28Q96AY4 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
TTC28Q96AY4 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.72■■□□□ 1.87
TTC28Q96AY4 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
TTC28Q96AY4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC26.72■■□□□ 1.87
TTC28Q96AY4 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.71■■□□□ 1.87
TTC28Q96AY4 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
TTC28Q96AY4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
TTC28Q96AY4 BEX3-202ENST00000372634 753 ntTSL 2 BASIC26.71■■□□□ 1.87
TTC28Q96AY4 AL592293.1-201ENST00000502889 1188 ntBASIC26.71■■□□□ 1.87
TTC28Q96AY4 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
TTC28Q96AY4 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
TTC28Q96AY4 AC103834.1-201ENST00000520383 144 ntBASIC26.7■■□□□ 1.86
TTC28Q96AY4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
TTC28Q96AY4 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
TTC28Q96AY4 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC26.7■■□□□ 1.86
TTC28Q96AY4 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
TTC28Q96AY4 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
TTC28Q96AY4 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
TTC28Q96AY4 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.68■■□□□ 1.86
TTC28Q96AY4 AC007029.1-201ENST00000604183 313 ntBASIC26.68■■□□□ 1.86
TTC28Q96AY4 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
TTC28Q96AY4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC26.67■■□□□ 1.86
TTC28Q96AY4 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
TTC28Q96AY4 YBX1P4-201ENST00000392794 808 ntBASIC26.67■■□□□ 1.86
TTC28Q96AY4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC26.66■■□□□ 1.86
TTC28Q96AY4 MOB2-207ENST00000614710 705 ntTSL 5 BASIC26.66■■□□□ 1.86
TTC28Q96AY4 AC074183.2-201ENST00000623112 922 ntBASIC26.66■■□□□ 1.86
TTC28Q96AY4 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
TTC28Q96AY4 AL157400.5-201ENST00000507624 621 ntBASIC26.65■■□□□ 1.86
TTC28Q96AY4 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC26.65■■□□□ 1.86
TTC28Q96AY4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
TTC28Q96AY4 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.65■■□□□ 1.86
TTC28Q96AY4 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC26.65■■□□□ 1.86
TTC28Q96AY4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC26.65■■□□□ 1.86
TTC28Q96AY4 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
TTC28Q96AY4 AC092666.2-201ENST00000613287 246 ntBASIC26.64■■□□□ 1.86
TTC28Q96AY4 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
TTC28Q96AY4 MIR219A2-201ENST00000608502 1504 ntBASIC26.64■■□□□ 1.86
TTC28Q96AY4 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.85
TTC28Q96AY4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.85
TTC28Q96AY4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
TTC28Q96AY4 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.64■■□□□ 1.85
TTC28Q96AY4 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.85
TTC28Q96AY4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.64■■□□□ 1.85
TTC28Q96AY4 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.85
TTC28Q96AY4 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.63■■□□□ 1.85
TTC28Q96AY4 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
TTC28Q96AY4 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
TTC28Q96AY4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TTC28Q96AY4 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC26.62■■□□□ 1.85
TTC28Q96AY4 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
TTC28Q96AY4 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.62■■□□□ 1.85
TTC28Q96AY4 SMPD5-203ENST00000639008 1464 ntBASIC26.62■■□□□ 1.85
TTC28Q96AY4 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC26.61■■□□□ 1.85
TTC28Q96AY4 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
TTC28Q96AY4 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
TTC28Q96AY4 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
TTC28Q96AY4 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC26.59■■□□□ 1.85
TTC28Q96AY4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC26.59■■□□□ 1.85
TTC28Q96AY4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.59■■□□□ 1.85
TTC28Q96AY4 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.59■■□□□ 1.85
TTC28Q96AY4 BHLHE23-202ENST00000612929 1109 ntBASIC26.58■■□□□ 1.85
TTC28Q96AY4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
TTC28Q96AY4 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC26.56■■□□□ 1.84
TTC28Q96AY4 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC26.56■■□□□ 1.84
TTC28Q96AY4 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC26.55■■□□□ 1.84
TTC28Q96AY4 AC103724.3-201ENST00000564481 992 ntBASIC26.55■■□□□ 1.84
TTC28Q96AY4 MIR4508-201ENST00000584178 70 ntBASIC26.55■■□□□ 1.84
TTC28Q96AY4 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
TTC28Q96AY4 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
TTC28Q96AY4 AC026202.3-201ENST00000600805 1127 ntBASIC26.54■■□□□ 1.84
TTC28Q96AY4 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
TTC28Q96AY4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC26.54■■□□□ 1.84
TTC28Q96AY4 MIR6765-201ENST00000614092 87 ntBASIC26.53■■□□□ 1.84
TTC28Q96AY4 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC26.53■■□□□ 1.84
TTC28Q96AY4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC26.52■■□□□ 1.84
TTC28Q96AY4 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms