Protein–RNA interactions for Protein: Q8K4J2

Ebf4, Transcription factor COE4, mousemouse

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ebf4Q8K4J2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Ebf4Q8K4J2 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
Ebf4Q8K4J2 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Ebf4Q8K4J2 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ebf4Q8K4J2 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ebf4Q8K4J2 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.3■■□□□ 1
Ebf4Q8K4J2 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ebf4Q8K4J2 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Ebf4Q8K4J2 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ebf4Q8K4J2 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ebf4Q8K4J2 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ebf4Q8K4J2 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC21.29■■□□□ 1
Ebf4Q8K4J2 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.29■■□□□ 1
Ebf4Q8K4J2 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ebf4Q8K4J2 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Ebf4Q8K4J2 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ebf4Q8K4J2 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
Ebf4Q8K4J2 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ebf4Q8K4J2 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Ebf4Q8K4J2 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ebf4Q8K4J2 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.27■■□□□ 1
Ebf4Q8K4J2 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ebf4Q8K4J2 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Ebf4Q8K4J2 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ebf4Q8K4J2 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Ebf4Q8K4J2 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ebf4Q8K4J2 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Ebf4Q8K4J2 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ebf4Q8K4J2 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ebf4Q8K4J2 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Ebf4Q8K4J2 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ebf4Q8K4J2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Ebf4Q8K4J2 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ebf4Q8K4J2 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Ebf4Q8K4J2 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ebf4Q8K4J2 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Ebf4Q8K4J2 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ebf4Q8K4J2 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ebf4Q8K4J2 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ebf4Q8K4J2 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Ebf4Q8K4J2 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ebf4Q8K4J2 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
Ebf4Q8K4J2 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ebf4Q8K4J2 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ebf4Q8K4J2 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ebf4Q8K4J2 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ebf4Q8K4J2 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Ebf4Q8K4J2 Gm26115-201ENSMUST00000175605 87 ntBASIC21.19■□□□□ 0.98
Ebf4Q8K4J2 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ebf4Q8K4J2 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ebf4Q8K4J2 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ebf4Q8K4J2 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.18■□□□□ 0.98
Ebf4Q8K4J2 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ebf4Q8K4J2 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.18■□□□□ 0.98
Ebf4Q8K4J2 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ebf4Q8K4J2 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ebf4Q8K4J2 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ebf4Q8K4J2 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ebf4Q8K4J2 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ebf4Q8K4J2 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ebf4Q8K4J2 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ebf4Q8K4J2 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ebf4Q8K4J2 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ebf4Q8K4J2 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ebf4Q8K4J2 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21.14■□□□□ 0.98
Ebf4Q8K4J2 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Ebf4Q8K4J2 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Ebf4Q8K4J2 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ebf4Q8K4J2 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ebf4Q8K4J2 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ebf4Q8K4J2 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ebf4Q8K4J2 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ebf4Q8K4J2 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.13■□□□□ 0.97
Ebf4Q8K4J2 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC21.13■□□□□ 0.97
Ebf4Q8K4J2 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ebf4Q8K4J2 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ebf4Q8K4J2 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf4Q8K4J2 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ebf4Q8K4J2 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ebf4Q8K4J2 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ebf4Q8K4J2 Gm8109-201ENSMUST00000194076 746 ntBASIC21.1■□□□□ 0.97
Ebf4Q8K4J2 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Ebf4Q8K4J2 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ebf4Q8K4J2 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ebf4Q8K4J2 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ebf4Q8K4J2 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Ebf4Q8K4J2 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Ebf4Q8K4J2 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Ebf4Q8K4J2 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Ebf4Q8K4J2 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ebf4Q8K4J2 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ebf4Q8K4J2 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC21.06■□□□□ 0.96
Ebf4Q8K4J2 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ebf4Q8K4J2 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ebf4Q8K4J2 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Ebf4Q8K4J2 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ebf4Q8K4J2 Gm42699-201ENSMUST00000198104 1657 ntBASIC21.05■□□□□ 0.96
Ebf4Q8K4J2 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ebf4Q8K4J2 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ebf4Q8K4J2 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 147.9 ms