Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC33.46■■■□□ 2.95
Usp47Q8BY87 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Usp47Q8BY87 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC33.46■■■□□ 2.95
Usp47Q8BY87 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC33.46■■■□□ 2.95
Usp47Q8BY87 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC33.45■■■□□ 2.95
Usp47Q8BY87 Gm6311-201ENSMUST00000073790 878 ntBASIC33.45■■■□□ 2.94
Usp47Q8BY87 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC33.44■■■□□ 2.94
Usp47Q8BY87 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
Usp47Q8BY87 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC33.44■■■□□ 2.94
Usp47Q8BY87 Gm45364-201ENSMUST00000210883 159 ntBASIC33.42■■■□□ 2.94
Usp47Q8BY87 AC154454.1-201ENSMUST00000225253 216 ntBASIC33.42■■■□□ 2.94
Usp47Q8BY87 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC33.42■■■□□ 2.94
Usp47Q8BY87 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Usp47Q8BY87 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC33.42■■■□□ 2.94
Usp47Q8BY87 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
Usp47Q8BY87 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC33.41■■■□□ 2.94
Usp47Q8BY87 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC33.41■■■□□ 2.94
Usp47Q8BY87 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
Usp47Q8BY87 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC33.4■■■□□ 2.94
Usp47Q8BY87 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC33.4■■■□□ 2.94
Usp47Q8BY87 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC33.39■■■□□ 2.94
Usp47Q8BY87 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
Usp47Q8BY87 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
Usp47Q8BY87 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
Usp47Q8BY87 Gm13889-201ENSMUST00000099689 1386 ntBASIC33.37■■■□□ 2.93
Usp47Q8BY87 Gm4799-201ENSMUST00000095396 657 ntBASIC33.36■■■□□ 2.93
Usp47Q8BY87 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
Usp47Q8BY87 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC33.36■■■□□ 2.93
Usp47Q8BY87 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
Usp47Q8BY87 Mir3960-201ENSMUST00000198213 73 ntBASIC33.35■■■□□ 2.93
Usp47Q8BY87 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC33.35■■■□□ 2.93
Usp47Q8BY87 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Usp47Q8BY87 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC33.34■■■□□ 2.93
Usp47Q8BY87 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Usp47Q8BY87 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Usp47Q8BY87 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Usp47Q8BY87 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Usp47Q8BY87 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
Usp47Q8BY87 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
Usp47Q8BY87 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
Usp47Q8BY87 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
Usp47Q8BY87 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Usp47Q8BY87 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC33.26■■■□□ 2.92
Usp47Q8BY87 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC33.26■■■□□ 2.92
Usp47Q8BY87 Pkd1-207ENSMUST00000228550 1050 ntBASIC33.26■■■□□ 2.92
Usp47Q8BY87 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
Usp47Q8BY87 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
Usp47Q8BY87 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Usp47Q8BY87 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Usp47Q8BY87 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
Usp47Q8BY87 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
Usp47Q8BY87 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
Usp47Q8BY87 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Usp47Q8BY87 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
Usp47Q8BY87 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC33.21■■■□□ 2.91
Usp47Q8BY87 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC33.21■■■□□ 2.91
Usp47Q8BY87 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC33.21■■■□□ 2.91
Usp47Q8BY87 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
Usp47Q8BY87 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
Usp47Q8BY87 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
Usp47Q8BY87 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC33.2■■■□□ 2.9
Usp47Q8BY87 Gm12818-201ENSMUST00000117562 1349 ntBASIC33.19■■■□□ 2.9
Usp47Q8BY87 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
Usp47Q8BY87 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
Usp47Q8BY87 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC33.19■■■□□ 2.9
Usp47Q8BY87 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
Usp47Q8BY87 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
Usp47Q8BY87 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
Usp47Q8BY87 Mir6538-201ENSMUST00000183713 110 ntBASIC33.18■■■□□ 2.9
Usp47Q8BY87 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
Usp47Q8BY87 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
Usp47Q8BY87 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Usp47Q8BY87 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC33.16■■■□□ 2.9
Usp47Q8BY87 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC33.15■■■□□ 2.9
Usp47Q8BY87 AC122317.2-201ENSMUST00000218708 1248 ntBASIC33.15■■■□□ 2.9
Usp47Q8BY87 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC33.15■■■□□ 2.9
Usp47Q8BY87 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
Usp47Q8BY87 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC33.14■■■□□ 2.9
Usp47Q8BY87 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC33.14■■■□□ 2.9
Usp47Q8BY87 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
Usp47Q8BY87 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
Usp47Q8BY87 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
Usp47Q8BY87 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC33.13■■■□□ 2.89
Usp47Q8BY87 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
Usp47Q8BY87 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC33.13■■■□□ 2.89
Usp47Q8BY87 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC33.13■■■□□ 2.89
Usp47Q8BY87 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC33.12■■■□□ 2.89
Usp47Q8BY87 Gm9812-201ENSMUST00000061934 968 ntBASIC33.11■■■□□ 2.89
Usp47Q8BY87 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
Usp47Q8BY87 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC33.11■■■□□ 2.89
Usp47Q8BY87 Scarna2-201ENSMUST00000157560 414 ntBASIC33.1■■■□□ 2.89
Usp47Q8BY87 AC122428.3-201ENSMUST00000215551 2290 ntBASIC33.1■■■□□ 2.89
Usp47Q8BY87 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC33.09■■■□□ 2.89
Usp47Q8BY87 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
Usp47Q8BY87 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Usp47Q8BY87 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
Usp47Q8BY87 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
Usp47Q8BY87 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC33.08■■■□□ 2.89
Usp47Q8BY87 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
Usp47Q8BY87 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms