Protein–RNA interactions for Protein: Q86VN1

VPS36, Vacuolar protein-sorting-associated protein 36, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36Q86VN1 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
VPS36Q86VN1 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC27.23■■□□□ 1.95
VPS36Q86VN1 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC27.22■■□□□ 1.95
VPS36Q86VN1 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC27.22■■□□□ 1.95
VPS36Q86VN1 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
VPS36Q86VN1 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.21■■□□□ 1.95
VPS36Q86VN1 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
VPS36Q86VN1 AC135983.2-203ENST00000454486 1613 ntBASIC27.2■■□□□ 1.95
VPS36Q86VN1 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
VPS36Q86VN1 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC27.2■■□□□ 1.94
VPS36Q86VN1 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.94
VPS36Q86VN1 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
VPS36Q86VN1 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
VPS36Q86VN1 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
VPS36Q86VN1 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC27.19■■□□□ 1.94
VPS36Q86VN1 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
VPS36Q86VN1 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC27.19■■□□□ 1.94
VPS36Q86VN1 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC27.18■■□□□ 1.94
VPS36Q86VN1 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC27.18■■□□□ 1.94
VPS36Q86VN1 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC27.18■■□□□ 1.94
VPS36Q86VN1 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
VPS36Q86VN1 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
VPS36Q86VN1 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC27.17■■□□□ 1.94
VPS36Q86VN1 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
VPS36Q86VN1 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
VPS36Q86VN1 MIR3665-201ENST00000578708 105 ntBASIC27.17■■□□□ 1.94
VPS36Q86VN1 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
VPS36Q86VN1 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
VPS36Q86VN1 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
VPS36Q86VN1 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
VPS36Q86VN1 AL162393.1-201ENST00000437852 946 ntBASIC27.16■■□□□ 1.94
VPS36Q86VN1 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC27.16■■□□□ 1.94
VPS36Q86VN1 DUX4L28-201ENST00000623687 678 ntBASIC27.16■■□□□ 1.94
VPS36Q86VN1 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
VPS36Q86VN1 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
VPS36Q86VN1 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
VPS36Q86VN1 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
VPS36Q86VN1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
VPS36Q86VN1 MIR6090-201ENST00000622481 60 ntBASIC27.15■■□□□ 1.94
VPS36Q86VN1 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
VPS36Q86VN1 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC27.14■■□□□ 1.94
VPS36Q86VN1 AP006261.1-201ENST00000584783 668 ntBASIC27.14■■□□□ 1.94
VPS36Q86VN1 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
VPS36Q86VN1 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
VPS36Q86VN1 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
VPS36Q86VN1 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
VPS36Q86VN1 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
VPS36Q86VN1 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
VPS36Q86VN1 NRG1-221ENST00000614767 762 ntTSL 5 BASIC27.13■■□□□ 1.93
VPS36Q86VN1 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
VPS36Q86VN1 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
VPS36Q86VN1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC27.12■■□□□ 1.93
VPS36Q86VN1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC27.12■■□□□ 1.93
VPS36Q86VN1 LINC00273-201ENST00000539813 1452 ntBASIC27.12■■□□□ 1.93
VPS36Q86VN1 WHAMMP2-203ENST00000563942 1603 ntBASIC27.12■■□□□ 1.93
VPS36Q86VN1 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
VPS36Q86VN1 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC27.11■■□□□ 1.93
VPS36Q86VN1 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
VPS36Q86VN1 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
VPS36Q86VN1 CREM-210ENST00000374721 2020 ntTSL 5 BASIC27.11■■□□□ 1.93
VPS36Q86VN1 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
VPS36Q86VN1 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
VPS36Q86VN1 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
VPS36Q86VN1 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
VPS36Q86VN1 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
VPS36Q86VN1 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
VPS36Q86VN1 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
VPS36Q86VN1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC27.07■■□□□ 1.92
VPS36Q86VN1 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC27.07■■□□□ 1.92
VPS36Q86VN1 AC018358.1-201ENST00000631079 1402 ntBASIC27.07■■□□□ 1.92
VPS36Q86VN1 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
VPS36Q86VN1 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC27.06■■□□□ 1.92
VPS36Q86VN1 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
VPS36Q86VN1 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC27.05■■□□□ 1.92
VPS36Q86VN1 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
VPS36Q86VN1 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
VPS36Q86VN1 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC27.04■■□□□ 1.92
VPS36Q86VN1 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
VPS36Q86VN1 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
VPS36Q86VN1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
VPS36Q86VN1 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
VPS36Q86VN1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
VPS36Q86VN1 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
VPS36Q86VN1 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
VPS36Q86VN1 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
VPS36Q86VN1 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC27■■□□□ 1.91
VPS36Q86VN1 CIB2-204ENST00000557846 934 ntTSL 3 BASIC27■■□□□ 1.91
VPS36Q86VN1 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC27■■□□□ 1.91
VPS36Q86VN1 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
VPS36Q86VN1 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
VPS36Q86VN1 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
VPS36Q86VN1 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
VPS36Q86VN1 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VPS36Q86VN1 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.98■■□□□ 1.91
VPS36Q86VN1 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.98■■□□□ 1.91
VPS36Q86VN1 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.98■■□□□ 1.91
VPS36Q86VN1 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.98■■□□□ 1.91
VPS36Q86VN1 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC26.98■■□□□ 1.91
VPS36Q86VN1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VPS36Q86VN1 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.97■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms