Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Chd4Q6PDQ2 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC31.48■■■□□ 2.63
Chd4Q6PDQ2 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Chd4Q6PDQ2 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC31.48■■■□□ 2.63
Chd4Q6PDQ2 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Chd4Q6PDQ2 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Chd4Q6PDQ2 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Chd4Q6PDQ2 Gm12818-201ENSMUST00000117562 1349 ntBASIC31.46■■■□□ 2.63
Chd4Q6PDQ2 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
Chd4Q6PDQ2 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Chd4Q6PDQ2 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Chd4Q6PDQ2 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Chd4Q6PDQ2 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Chd4Q6PDQ2 Gm27502-201ENSMUST00000183495 199 ntBASIC31.43■■■□□ 2.62
Chd4Q6PDQ2 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC31.43■■■□□ 2.62
Chd4Q6PDQ2 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Chd4Q6PDQ2 Gm14121-201ENSMUST00000121441 1380 ntBASIC31.43■■■□□ 2.62
Chd4Q6PDQ2 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Chd4Q6PDQ2 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Chd4Q6PDQ2 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
Chd4Q6PDQ2 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Chd4Q6PDQ2 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Chd4Q6PDQ2 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Chd4Q6PDQ2 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC31.4■■■□□ 2.62
Chd4Q6PDQ2 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Chd4Q6PDQ2 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC31.4■■■□□ 2.62
Chd4Q6PDQ2 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Chd4Q6PDQ2 AC151971.4-201ENSMUST00000214717 704 ntBASIC31.39■■■□□ 2.62
Chd4Q6PDQ2 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC31.39■■■□□ 2.62
Chd4Q6PDQ2 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Chd4Q6PDQ2 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Chd4Q6PDQ2 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Chd4Q6PDQ2 Gm13889-201ENSMUST00000099689 1386 ntBASIC31.37■■■□□ 2.61
Chd4Q6PDQ2 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Chd4Q6PDQ2 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Chd4Q6PDQ2 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Chd4Q6PDQ2 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC31.34■■■□□ 2.61
Chd4Q6PDQ2 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC31.34■■■□□ 2.61
Chd4Q6PDQ2 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC31.34■■■□□ 2.61
Chd4Q6PDQ2 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Chd4Q6PDQ2 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC31.33■■■□□ 2.61
Chd4Q6PDQ2 Gm7332-201ENSMUST00000118351 454 ntBASIC31.32■■■□□ 2.6
Chd4Q6PDQ2 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Chd4Q6PDQ2 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC31.32■■■□□ 2.6
Chd4Q6PDQ2 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC31.31■■■□□ 2.6
Chd4Q6PDQ2 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
Chd4Q6PDQ2 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Chd4Q6PDQ2 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Chd4Q6PDQ2 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
Chd4Q6PDQ2 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC31.3■■■□□ 2.6
Chd4Q6PDQ2 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Chd4Q6PDQ2 Gm9910-201ENSMUST00000195385 1550 ntBASIC31.29■■■□□ 2.6
Chd4Q6PDQ2 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Chd4Q6PDQ2 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Chd4Q6PDQ2 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC31.28■■■□□ 2.6
Chd4Q6PDQ2 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Chd4Q6PDQ2 Amer2-203ENSMUST00000225247 2662 ntBASIC31.27■■■□□ 2.6
Chd4Q6PDQ2 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
Chd4Q6PDQ2 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Chd4Q6PDQ2 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Chd4Q6PDQ2 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Chd4Q6PDQ2 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
Chd4Q6PDQ2 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Chd4Q6PDQ2 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
Chd4Q6PDQ2 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Chd4Q6PDQ2 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
Chd4Q6PDQ2 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Chd4Q6PDQ2 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC31.22■■■□□ 2.59
Chd4Q6PDQ2 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
Chd4Q6PDQ2 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Chd4Q6PDQ2 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Chd4Q6PDQ2 Gm9812-201ENSMUST00000061934 968 ntBASIC31.21■■■□□ 2.59
Chd4Q6PDQ2 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Chd4Q6PDQ2 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
Chd4Q6PDQ2 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC31.21■■■□□ 2.59
Chd4Q6PDQ2 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Chd4Q6PDQ2 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC31.2■■■□□ 2.59
Chd4Q6PDQ2 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC31.2■■■□□ 2.59
Chd4Q6PDQ2 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
Chd4Q6PDQ2 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Chd4Q6PDQ2 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.58
Chd4Q6PDQ2 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC31.19■■■□□ 2.58
Chd4Q6PDQ2 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC31.19■■■□□ 2.58
Chd4Q6PDQ2 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Chd4Q6PDQ2 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Chd4Q6PDQ2 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC31.18■■■□□ 2.58
Chd4Q6PDQ2 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
Chd4Q6PDQ2 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Chd4Q6PDQ2 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Chd4Q6PDQ2 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Chd4Q6PDQ2 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
Chd4Q6PDQ2 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
Chd4Q6PDQ2 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Chd4Q6PDQ2 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Chd4Q6PDQ2 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC31.12■■■□□ 2.57
Chd4Q6PDQ2 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Chd4Q6PDQ2 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Chd4Q6PDQ2 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Chd4Q6PDQ2 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Chd4Q6PDQ2 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms