Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC30.63■■■□□ 2.49
Ddb1Q3U1J4 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Ddb1Q3U1J4 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Ddb1Q3U1J4 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Ddb1Q3U1J4 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Ddb1Q3U1J4 Gm10420-201ENSMUST00000121713 882 ntBASIC30.61■■■□□ 2.49
Ddb1Q3U1J4 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC30.61■■■□□ 2.49
Ddb1Q3U1J4 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC30.61■■■□□ 2.49
Ddb1Q3U1J4 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Ddb1Q3U1J4 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Ddb1Q3U1J4 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC30.6■■■□□ 2.49
Ddb1Q3U1J4 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Ddb1Q3U1J4 Gm5921-201ENSMUST00000075898 882 ntBASIC30.6■■■□□ 2.49
Ddb1Q3U1J4 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
Ddb1Q3U1J4 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Ddb1Q3U1J4 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Ddb1Q3U1J4 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Ddb1Q3U1J4 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Ddb1Q3U1J4 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Ddb1Q3U1J4 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC30.57■■■□□ 2.48
Ddb1Q3U1J4 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.48
Ddb1Q3U1J4 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Ddb1Q3U1J4 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC30.57■■■□□ 2.48
Ddb1Q3U1J4 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC30.56■■■□□ 2.48
Ddb1Q3U1J4 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Ddb1Q3U1J4 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ddb1Q3U1J4 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ddb1Q3U1J4 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ddb1Q3U1J4 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ddb1Q3U1J4 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ddb1Q3U1J4 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC30.55■■■□□ 2.48
Ddb1Q3U1J4 Gm9812-201ENSMUST00000061934 968 ntBASIC30.55■■■□□ 2.48
Ddb1Q3U1J4 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Ddb1Q3U1J4 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Ddb1Q3U1J4 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC30.54■■■□□ 2.48
Ddb1Q3U1J4 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ddb1Q3U1J4 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ddb1Q3U1J4 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Ddb1Q3U1J4 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC30.52■■■□□ 2.48
Ddb1Q3U1J4 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
Ddb1Q3U1J4 AC122317.2-201ENSMUST00000218708 1248 ntBASIC30.51■■■□□ 2.47
Ddb1Q3U1J4 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Ddb1Q3U1J4 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
Ddb1Q3U1J4 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Ddb1Q3U1J4 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC30.49■■■□□ 2.47
Ddb1Q3U1J4 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Ddb1Q3U1J4 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC30.49■■■□□ 2.47
Ddb1Q3U1J4 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC30.49■■■□□ 2.47
Ddb1Q3U1J4 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Ddb1Q3U1J4 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Ddb1Q3U1J4 Gm15546-201ENSMUST00000122095 826 ntBASIC30.47■■■□□ 2.47
Ddb1Q3U1J4 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Ddb1Q3U1J4 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC30.46■■■□□ 2.47
Ddb1Q3U1J4 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC30.46■■■□□ 2.47
Ddb1Q3U1J4 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Ddb1Q3U1J4 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
Ddb1Q3U1J4 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Ddb1Q3U1J4 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Ddb1Q3U1J4 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Ddb1Q3U1J4 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Ddb1Q3U1J4 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Ddb1Q3U1J4 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC30.41■■■□□ 2.46
Ddb1Q3U1J4 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Ddb1Q3U1J4 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Ddb1Q3U1J4 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Ddb1Q3U1J4 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
Ddb1Q3U1J4 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.45
Ddb1Q3U1J4 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
Ddb1Q3U1J4 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
Ddb1Q3U1J4 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ddb1Q3U1J4 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC30.37■■■□□ 2.45
Ddb1Q3U1J4 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Ddb1Q3U1J4 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Ddb1Q3U1J4 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Ddb1Q3U1J4 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
Ddb1Q3U1J4 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC30.33■■■□□ 2.45
Ddb1Q3U1J4 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC30.33■■■□□ 2.45
Ddb1Q3U1J4 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC30.33■■■□□ 2.45
Ddb1Q3U1J4 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
Ddb1Q3U1J4 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Ddb1Q3U1J4 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC30.32■■■□□ 2.44
Ddb1Q3U1J4 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Ddb1Q3U1J4 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
Ddb1Q3U1J4 Gm5522-201ENSMUST00000189483 1242 ntBASIC30.31■■■□□ 2.44
Ddb1Q3U1J4 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Ddb1Q3U1J4 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Ddb1Q3U1J4 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC30.3■■■□□ 2.44
Ddb1Q3U1J4 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Ddb1Q3U1J4 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
Ddb1Q3U1J4 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
Ddb1Q3U1J4 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC30.27■■■□□ 2.44
Ddb1Q3U1J4 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.44
Ddb1Q3U1J4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
Ddb1Q3U1J4 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
Ddb1Q3U1J4 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Ddb1Q3U1J4 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Ddb1Q3U1J4 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC30.25■■■□□ 2.43
Ddb1Q3U1J4 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Ddb1Q3U1J4 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Ddb1Q3U1J4 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms