Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
PRKDCP78527 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PRKDCP78527 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PRKDCP78527 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PRKDCP78527 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
PRKDCP78527 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PRKDCP78527 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19■□□□□ 0.63
PRKDCP78527 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PRKDCP78527 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
PRKDCP78527 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
PRKDCP78527 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PRKDCP78527 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
PRKDCP78527 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
PRKDCP78527 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PRKDCP78527 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PRKDCP78527 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PRKDCP78527 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PRKDCP78527 CHST11-203ENST00000547956 936 ntTSL 2 BASIC18.98■□□□□ 0.63
PRKDCP78527 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC18.98■□□□□ 0.63
PRKDCP78527 AC103834.1-201ENST00000520383 144 ntBASIC18.98■□□□□ 0.63
PRKDCP78527 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PRKDCP78527 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC18.97■□□□□ 0.63
PRKDCP78527 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC18.97■□□□□ 0.63
PRKDCP78527 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC18.97■□□□□ 0.63
PRKDCP78527 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PRKDCP78527 AC010980.1-201ENST00000587192 1142 ntBASIC18.96■□□□□ 0.63
PRKDCP78527 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PRKDCP78527 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.96■□□□□ 0.63
PRKDCP78527 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PRKDCP78527 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC18.96■□□□□ 0.63
PRKDCP78527 AC007029.1-201ENST00000604183 313 ntBASIC18.96■□□□□ 0.63
PRKDCP78527 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PRKDCP78527 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PRKDCP78527 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PRKDCP78527 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
PRKDCP78527 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKDCP78527 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC18.93■□□□□ 0.62
PRKDCP78527 MOB2-207ENST00000614710 705 ntTSL 5 BASIC18.93■□□□□ 0.62
PRKDCP78527 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PRKDCP78527 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PRKDCP78527 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKDCP78527 AC009831.1-201ENST00000580420 1582 ntBASIC18.93■□□□□ 0.62
PRKDCP78527 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKDCP78527 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKDCP78527 DUX4L9-201ENST00000449051 1259 ntBASIC18.93■□□□□ 0.62
PRKDCP78527 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKDCP78527 MED25-210ENST00000612854 801 ntTSL 5 BASIC18.92■□□□□ 0.62
PRKDCP78527 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PRKDCP78527 MED25-214ENST00000622402 642 ntTSL 5 BASIC18.92■□□□□ 0.62
PRKDCP78527 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PRKDCP78527 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.92■□□□□ 0.62
PRKDCP78527 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKDCP78527 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PRKDCP78527 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PRKDCP78527 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PRKDCP78527 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PRKDCP78527 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PRKDCP78527 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKDCP78527 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC18.9■□□□□ 0.62
PRKDCP78527 MIR219A2-201ENST00000608502 1504 ntBASIC18.9■□□□□ 0.62
PRKDCP78527 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PRKDCP78527 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.9■□□□□ 0.62
PRKDCP78527 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
PRKDCP78527 MIR638-201ENST00000385237 100 ntBASIC18.89■□□□□ 0.62
PRKDCP78527 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC18.89■□□□□ 0.61
PRKDCP78527 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PRKDCP78527 WHAMMP2-203ENST00000563942 1603 ntBASIC18.88■□□□□ 0.61
PRKDCP78527 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PRKDCP78527 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PRKDCP78527 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.87■□□□□ 0.61
PRKDCP78527 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PRKDCP78527 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PRKDCP78527 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.87■□□□□ 0.61
PRKDCP78527 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC18.87■□□□□ 0.61
PRKDCP78527 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PRKDCP78527 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.87■□□□□ 0.61
PRKDCP78527 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PRKDCP78527 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PRKDCP78527 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC18.86■□□□□ 0.61
PRKDCP78527 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
PRKDCP78527 RPS2-210ENST00000530225 765 ntTSL 2 BASIC18.85■□□□□ 0.61
PRKDCP78527 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC18.85■□□□□ 0.61
PRKDCP78527 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
PRKDCP78527 ECEL1P2-201ENST00000461596 1295 ntBASIC18.85■□□□□ 0.61
PRKDCP78527 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PRKDCP78527 AC133552.2-201ENST00000619106 1032 ntBASIC18.85■□□□□ 0.61
PRKDCP78527 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
PRKDCP78527 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PRKDCP78527 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.84■□□□□ 0.61
PRKDCP78527 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.84■□□□□ 0.61
PRKDCP78527 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PRKDCP78527 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PRKDCP78527 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PRKDCP78527 SPCS2P3-201ENST00000500401 656 ntBASIC18.83■□□□□ 0.61
PRKDCP78527 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC18.83■□□□□ 0.61
PRKDCP78527 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
PRKDCP78527 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
PRKDCP78527 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PRKDCP78527 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.82■□□□□ 0.6
PRKDCP78527 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms