Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 KDM3A-205ENST00000441719 8741 ntTSL 29.72□□□□□ -0.852e-13■■■■■ 62.7
SUB1P53999 KDM3A-202ENST00000409064 4621 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.992e-13■■■■■ 62.7
SUB1P53999 KDM3A-210ENST00000470160 2955 ntTSL 25.62□□□□□ -1.512e-13■■■■■ 62.7
SUB1P53999 KDM3A-214ENST00000491383 4485 ntTSL 1 (best)4.49□□□□□ -1.692e-13■■■■■ 62.7
SUB1P53999 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.712e-11■■■■■ 62.7
SUB1P53999 SFXN4-207ENST00000484960 555 ntTSL 310.6□□□□□ -0.712e-11■■■■■ 62.7
SUB1P53999 SFXN4-208ENST00000490417 952 ntTSL 210.35□□□□□ -0.752e-11■■■■■ 62.7
SUB1P53999 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.167e-9■■■■■ 62.6
SUB1P53999 KIFAP3-206ENST00000538366 3159 ntTSL 2 BASIC9.06□□□□□ -0.967e-9■■■■■ 62.5
SUB1P53999 KIFAP3-201ENST00000361580 2957 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.027e-9■■■■■ 62.5
SUB1P53999 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC6.05□□□□□ -1.447e-9■■■■■ 62.5
SUB1P53999 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3□□□□□ -1.937e-9■■■■■ 62.5
SUB1P53999 SOD1-203ENST00000470944 1746 ntTSL 222.48■■□□□ 1.191e-13■■■■■ 62.4
SUB1P53999 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.631e-13■■■■■ 62.4
SUB1P53999 SOD1-202ENST00000389995 865 ntTSL 3 BASIC8.28□□□□□ -1.081e-13■■■■■ 62.4
SUB1P53999 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC5.41□□□□□ -1.543e-8■■■■■ 62.1
SUB1P53999 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.82□□□□□ -0.362e-12■■■■■ 62
SUB1P53999 WARS-238ENST00000557135 2080 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.152e-12■■■■■ 62
SUB1P53999 PARK7-207ENST00000469225 711 ntTSL 36.95□□□□□ -1.31e-7■■■■■ 62
SUB1P53999 PPID-201ENST00000307720 1823 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.135e-7■■■■■ 61.8
SUB1P53999 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.48□□□□□ -0.419e-61■■■■■ 61.6
SUB1P53999 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.31e-7■■■■■ 61.5
SUB1P53999 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.04□□□□□ -2.086e-12■■■■■ 61.5
SUB1P53999 LAMP1-203ENST00000472564 5242 ntTSL 215.3■□□□□ 0.045e-11■■■■■ 61.4
SUB1P53999 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.015e-11■■■■■ 61.4
SUB1P53999 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.527e-7■■■■■ 61.4
SUB1P53999 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC10.56□□□□□ -0.727e-7■■■■■ 61.4
SUB1P53999 NDUFC2-KCTD14-204ENST00000614236 386 ntTSL 5 BASIC8.8□□□□□ -17e-7■■■■■ 61.4
SUB1P53999 NDUFC2-KCTD14-201ENST00000528251 566 ntTSL 4 BASIC8.71□□□□□ -1.027e-7■■■■■ 61.4
SUB1P53999 NDUFC2-203ENST00000527806 1888 ntTSL 2 BASIC8.03□□□□□ -1.127e-7■■■■■ 61.4
SUB1P53999 NDUFC2-KCTD14-203ENST00000612612 530 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.157e-7■■■■■ 61.4
SUB1P53999 NDUFC2-202ENST00000525085 495 ntTSL 3 BASIC6.51□□□□□ -1.377e-7■■■■■ 61.4
SUB1P53999 NDUFC2-205ENST00000534029 422 ntTSL 2 BASIC6.39□□□□□ -1.397e-7■■■■■ 61.4
SUB1P53999 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.494e-13■■■■■ 61.3
SUB1P53999 MYH9-201ENST00000216181 7501 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.774e-13■■■■■ 61.3
SUB1P53999 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.814e-13■■■■■ 61.3
SUB1P53999 ACAA2-205ENST00000587994 1657 ntAPPRIS ALT1 TSL 5 BASIC9.86□□□□□ -0.834e-13■■■■■ 61.3
SUB1P53999 ACAA2-201ENST00000285093 3350 ntAPPRIS P2 TSL 1 (best) BASIC8.86□□□□□ -0.994e-13■■■■■ 61.3
SUB1P53999 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC5.51□□□□□ -1.534e-13■■■■■ 61.3
SUB1P53999 ACAA2-207ENST00000591171 1850 ntTSL 24.69□□□□□ -1.664e-13■■■■■ 61.3
SUB1P53999 MRPL58-203ENST00000583772 678 ntTSL 23.83□□□□□ -1.84e-13■■■■■ 61.3
SUB1P53999 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.143e-9■■■■■ 61.1
SUB1P53999 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.1□□□□□ -0.153e-9■■■■■ 61.1
SUB1P53999 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC13.1□□□□□ -0.313e-9■■■■■ 61.1
SUB1P53999 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC10.88□□□□□ -0.673e-9■■■■■ 61.1
SUB1P53999 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC10.55□□□□□ -0.723e-9■■■■■ 61.1
SUB1P53999 DIABLO-202ENST00000342392 1336 ntTSL 1 (best)9.73□□□□□ -0.853e-9■■■■■ 61.1
SUB1P53999 AC048338.1-201ENST00000535844 2748 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.983e-9■■■■■ 61.1
SUB1P53999 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.813e-10■■■■■ 61.1
SUB1P53999 RPL9-205ENST00000503277 769 ntTSL 27.17□□□□□ -1.263e-10■■■■■ 61.1
SUB1P53999 SERINC1-201ENST00000339697 3137 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.128e-9■■■■■ 61.1
SUB1P53999 TYMS-205ENST00000581920 886 ntTSL 55.33□□□□□ -1.562e-8■■■■■ 60.9
SUB1P53999 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC12.08□□□□□ -0.485e-23■■■■■ 60.9
SUB1P53999 SND1-214ENST00000489417 1447 ntTSL 216.53■□□□□ 0.244e-12■■■■■ 60.7
SUB1P53999 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.491e-7■■■■■ 60.6
SUB1P53999 PGK1-201ENST00000373316 4887 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.881e-20■■■■■ 60.5
SUB1P53999 RPL9-211ENST00000514842 2153 ntTSL 59.34□□□□□ -0.911e-9■■■■■ 60.3
SUB1P53999 MTX2-202ENST00000420864 1592 ntTSL 1 (best)17.55■□□□□ 0.49e-9■■■■■ 60.3
SUB1P53999 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.229e-9■■■■■ 60.3
SUB1P53999 ABCE1-201ENST00000296577 3921 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.22e-9■■■■■ 60.3
SUB1P53999 SF3B3-206ENST00000565990 967 ntTSL 29.79□□□□□ -0.845e-9■■■■■ 60.1
SUB1P53999 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.061e-9■■■■■ 60
SUB1P53999 XPO5-207ENST00000455854 3629 ntTSL 26.83□□□□□ -1.321e-9■■■■■ 60
SUB1P53999 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.211e-7■■■■■ 59.8
SUB1P53999 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.78□□□□□ -0.522e-10■■■■■ 59.7
SUB1P53999 WARS-202ENST00000355338 3092 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.952e-10■■■■■ 59.7
SUB1P53999 WARS-201ENST00000344102 2690 ntTSL 5 BASIC7.99□□□□□ -1.132e-10■■■■■ 59.7
SUB1P53999 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.312e-10■■■■■ 59.7
SUB1P53999 SNRPB2-201ENST00000246071 2452 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.369e-16■■■■■ 59.6
SUB1P53999 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.99e-16■■■■■ 59.6
SUB1P53999 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.474e-9■■■■■ 59.5
SUB1P53999 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC10.32□□□□□ -0.767e-8■■■■■ 59.3
SUB1P53999 PSMA6-206ENST00000554541 925 ntTSL 28.63□□□□□ -1.037e-8■■■■■ 59.3
SUB1P53999 PSMA6-211ENST00000555764 1002 ntTSL 2 BASIC7.85□□□□□ -1.157e-8■■■■■ 59.3
SUB1P53999 PSMA6-202ENST00000540871 912 ntTSL 2 BASIC6.28□□□□□ -1.47e-8■■■■■ 59.3
SUB1P53999 PSMA6-209ENST00000554961 814 ntTSL 26.18□□□□□ -1.427e-8■■■■■ 59.3
SUB1P53999 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.597e-8■■■■■ 59.3
SUB1P53999 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.677e-8■■■■■ 59.3
SUB1P53999 SFT2D1-202ENST00000478705 659 ntTSL 211.97□□□□□ -0.492e-7■■■■■ 59.3
SUB1P53999 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.731e-11■■■■■ 59.1
SUB1P53999 GNPDA1-210ENST00000508177 2980 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.771e-11■■■■■ 59.1
SUB1P53999 GNPDA1-202ENST00000500692 2319 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.051e-11■■■■■ 59.1
SUB1P53999 GNPDA1-201ENST00000311337 2273 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.181e-11■■■■■ 59.1
SUB1P53999 GNPDA1-212ENST00000513454 980 ntTSL 5 BASIC6.29□□□□□ -1.41e-11■■■■■ 59.1
SUB1P53999 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC10.99□□□□□ -0.655e-8■■■■■ 59
SUB1P53999 CUL4A-204ENST00000451881 3724 ntTSL 5 BASIC10.75□□□□□ -0.695e-8■■■■■ 59
SUB1P53999 CUL4A-212ENST00000617546 5666 ntTSL 1 (best) BASIC9.22□□□□□ -0.935e-8■■■■■ 59
SUB1P53999 CUL4A-201ENST00000326335 3705 ntTSL 1 (best) BASIC8.54□□□□□ -1.045e-8■■■■■ 59
SUB1P53999 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.911e-12■■■■■ 59
SUB1P53999 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC15.83■□□□□ 0.121e-12■■■■■ 59
SUB1P53999 GLYR1-207ENST00000587936 897 ntTSL 510.06□□□□□ -0.81e-12■■■■■ 59
SUB1P53999 GLYR1-201ENST00000321919 3772 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.841e-12■■■■■ 59
SUB1P53999 FCGR2A-210ENST00000483665 1495 ntTSL 29.77□□□□□ -0.851e-12■■■■■ 59
SUB1P53999 GLYR1-202ENST00000436648 3466 ntTSL 2 BASIC9.31□□□□□ -0.921e-12■■■■■ 59
SUB1P53999 TIMMDC1-208ENST00000494664 2394 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.951e-12■■■■■ 59
SUB1P53999 UBAP2-203ENST00000379235 2673 ntTSL 1 (best)8.96□□□□□ -0.981e-12■■■■■ 59
SUB1P53999 GLYR1-210ENST00000589389 3606 ntTSL 1 (best)8.84□□□□□ -0.991e-12■■■■■ 59
SUB1P53999 TIMMDC1-201ENST00000264244 1271 ntTSL 1 (best)8.62□□□□□ -1.031e-12■■■■■ 59
SUB1P53999 UBAP2-205ENST00000379239 2513 ntTSL 2 BASIC8.21□□□□□ -1.11e-12■■■■■ 59
SUB1P53999 GLYR1-209ENST00000588732 3527 ntTSL 1 (best)8.16□□□□□ -1.11e-12■■■■■ 59
Retrieved 100 of 11,644 protein–RNA pairs in 221 ms