Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CDX1P47902 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CDX1P47902 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CDX1P47902 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CDX1P47902 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CDX1P47902 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.4■□□□□ 0.86
CDX1P47902 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CDX1P47902 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CDX1P47902 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDX1P47902 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDX1P47902 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDX1P47902 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDX1P47902 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
CDX1P47902 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDX1P47902 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CDX1P47902 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.38■□□□□ 0.85
CDX1P47902 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX1P47902 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.38■□□□□ 0.85
CDX1P47902 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CDX1P47902 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX1P47902 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC20.38■□□□□ 0.85
CDX1P47902 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CDX1P47902 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.37■□□□□ 0.85
CDX1P47902 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.37■□□□□ 0.85
CDX1P47902 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDX1P47902 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDX1P47902 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.36■□□□□ 0.85
CDX1P47902 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.35■□□□□ 0.85
CDX1P47902 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CDX1P47902 AC010864.1-201ENST00000609407 1511 ntBASIC20.35■□□□□ 0.85
CDX1P47902 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
CDX1P47902 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX1P47902 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX1P47902 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX1P47902 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDX1P47902 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.33■□□□□ 0.84
CDX1P47902 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDX1P47902 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.32■□□□□ 0.84
CDX1P47902 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.32■□□□□ 0.84
CDX1P47902 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.32■□□□□ 0.84
CDX1P47902 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDX1P47902 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
CDX1P47902 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDX1P47902 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CDX1P47902 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX1P47902 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX1P47902 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDX1P47902 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX1P47902 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX1P47902 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDX1P47902 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CDX1P47902 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDX1P47902 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX1P47902 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CDX1P47902 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.3■□□□□ 0.84
CDX1P47902 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.3■□□□□ 0.84
CDX1P47902 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDX1P47902 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX1P47902 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX1P47902 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX1P47902 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX1P47902 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CDX1P47902 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX1P47902 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDX1P47902 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX1P47902 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX1P47902 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.28■□□□□ 0.84
CDX1P47902 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDX1P47902 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX1P47902 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX1P47902 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX1P47902 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CDX1P47902 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX1P47902 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CDX1P47902 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CDX1P47902 AL135925.1-201ENST00000605920 1701 ntBASIC20.26■□□□□ 0.83
CDX1P47902 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
CDX1P47902 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX1P47902 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDX1P47902 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.25■□□□□ 0.83
CDX1P47902 LINC01971-201ENST00000617888 1048 ntBASIC20.25■□□□□ 0.83
CDX1P47902 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CDX1P47902 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.25■□□□□ 0.83
CDX1P47902 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX1P47902 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CDX1P47902 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDX1P47902 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CDX1P47902 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX1P47902 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX1P47902 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CDX1P47902 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX1P47902 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CDX1P47902 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX1P47902 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CDX1P47902 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CDX1P47902 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.21■□□□□ 0.83
CDX1P47902 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CDX1P47902 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDX1P47902 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.21■□□□□ 0.83
CDX1P47902 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms