Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
HNF4AP41235 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
HNF4AP41235 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
HNF4AP41235 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.58■■□□□ 1.53
HNF4AP41235 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
HNF4AP41235 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
HNF4AP41235 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.57■■□□□ 1.52
HNF4AP41235 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
HNF4AP41235 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
HNF4AP41235 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
HNF4AP41235 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
HNF4AP41235 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.57■■□□□ 1.52
HNF4AP41235 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.57■■□□□ 1.52
HNF4AP41235 AP002414.2-202ENST00000590929 1450 ntBASIC24.57■■□□□ 1.52
HNF4AP41235 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
HNF4AP41235 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
HNF4AP41235 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.56■■□□□ 1.52
HNF4AP41235 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
HNF4AP41235 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
HNF4AP41235 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HNF4AP41235 MLEC-202ENST00000412616 841 ntTSL 3 BASIC24.55■■□□□ 1.52
HNF4AP41235 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.55■■□□□ 1.52
HNF4AP41235 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HNF4AP41235 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HNF4AP41235 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
HNF4AP41235 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
HNF4AP41235 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
HNF4AP41235 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
HNF4AP41235 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
HNF4AP41235 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.52■■□□□ 1.52
HNF4AP41235 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
HNF4AP41235 BX255925.1-201ENST00000566954 1854 ntBASIC24.51■■□□□ 1.51
HNF4AP41235 ABHD17AP4-201ENST00000411545 909 ntBASIC24.51■■□□□ 1.51
HNF4AP41235 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
HNF4AP41235 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.49■■□□□ 1.51
HNF4AP41235 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
HNF4AP41235 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.49■■□□□ 1.51
HNF4AP41235 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
HNF4AP41235 ZNRF2P2-203ENST00000454624 420 ntBASIC24.48■■□□□ 1.51
HNF4AP41235 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
HNF4AP41235 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
HNF4AP41235 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HNF4AP41235 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.47■■□□□ 1.51
HNF4AP41235 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HNF4AP41235 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
HNF4AP41235 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.47■■□□□ 1.51
HNF4AP41235 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
HNF4AP41235 LINC01003-201ENST00000564834 1764 ntBASIC24.46■■□□□ 1.51
HNF4AP41235 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.46■■□□□ 1.51
HNF4AP41235 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HNF4AP41235 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HNF4AP41235 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
HNF4AP41235 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
HNF4AP41235 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HNF4AP41235 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HNF4AP41235 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
HNF4AP41235 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
HNF4AP41235 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.43■■□□□ 1.5
HNF4AP41235 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
HNF4AP41235 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
HNF4AP41235 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.42■■□□□ 1.5
HNF4AP41235 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC24.42■■□□□ 1.5
HNF4AP41235 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HNF4AP41235 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HNF4AP41235 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
HNF4AP41235 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
HNF4AP41235 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
HNF4AP41235 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.41■■□□□ 1.5
HNF4AP41235 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.4■■□□□ 1.5
HNF4AP41235 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HNF4AP41235 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC24.4■■□□□ 1.5
HNF4AP41235 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HNF4AP41235 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
HNF4AP41235 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
HNF4AP41235 AC018358.1-201ENST00000631079 1402 ntBASIC24.39■■□□□ 1.5
HNF4AP41235 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
HNF4AP41235 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
HNF4AP41235 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
HNF4AP41235 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
HNF4AP41235 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
HNF4AP41235 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HNF4AP41235 LINC01971-201ENST00000617888 1048 ntBASIC24.36■■□□□ 1.49
HNF4AP41235 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
HNF4AP41235 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.35■■□□□ 1.49
HNF4AP41235 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
HNF4AP41235 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
HNF4AP41235 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
HNF4AP41235 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
HNF4AP41235 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
HNF4AP41235 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
HNF4AP41235 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
HNF4AP41235 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
HNF4AP41235 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
HNF4AP41235 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HNF4AP41235 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
HNF4AP41235 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC24.32■■□□□ 1.48
HNF4AP41235 MIR7108-201ENST00000614319 87 ntBASIC24.32■■□□□ 1.48
HNF4AP41235 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
HNF4AP41235 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
HNF4AP41235 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms