Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DMBP28068 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HLA-DMBP28068 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC19.25■□□□□ 0.67
HLA-DMBP28068 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DMBP28068 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
HLA-DMBP28068 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DMBP28068 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DMBP28068 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC19.24■□□□□ 0.67
HLA-DMBP28068 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HLA-DMBP28068 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DMBP28068 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DMBP28068 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
HLA-DMBP28068 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC19.23■□□□□ 0.67
HLA-DMBP28068 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DMBP28068 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.23■□□□□ 0.67
HLA-DMBP28068 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DMBP28068 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DMBP28068 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HLA-DMBP28068 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DMBP28068 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC19.22■□□□□ 0.67
HLA-DMBP28068 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC19.22■□□□□ 0.67
HLA-DMBP28068 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DMBP28068 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DMBP28068 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DMBP28068 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HLA-DMBP28068 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DMBP28068 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
HLA-DMBP28068 MIR6090-201ENST00000622481 60 ntBASIC19.21■□□□□ 0.67
HLA-DMBP28068 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.21■□□□□ 0.67
HLA-DMBP28068 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DMBP28068 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DMBP28068 AC087741.3-201ENST00000624270 1347 ntBASIC19.21■□□□□ 0.67
HLA-DMBP28068 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DMBP28068 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DMBP28068 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.2■□□□□ 0.66
HLA-DMBP28068 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.2■□□□□ 0.66
HLA-DMBP28068 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DMBP28068 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC19.2■□□□□ 0.66
HLA-DMBP28068 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
HLA-DMBP28068 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DMBP28068 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DMBP28068 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.19■□□□□ 0.66
HLA-DMBP28068 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HLA-DMBP28068 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DMBP28068 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DMBP28068 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DMBP28068 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.19■□□□□ 0.66
HLA-DMBP28068 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DMBP28068 AC135983.2-203ENST00000454486 1613 ntBASIC19.18■□□□□ 0.66
HLA-DMBP28068 WHAMMP2-203ENST00000563942 1603 ntBASIC19.18■□□□□ 0.66
HLA-DMBP28068 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DMBP28068 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DMBP28068 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.17■□□□□ 0.66
HLA-DMBP28068 AP002414.2-202ENST00000590929 1450 ntBASIC19.17■□□□□ 0.66
HLA-DMBP28068 AC108673.1-201ENST00000510422 1159 ntBASIC19.17■□□□□ 0.66
HLA-DMBP28068 AC044849.2-201ENST00000606596 710 ntBASIC19.17■□□□□ 0.66
HLA-DMBP28068 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DMBP28068 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DMBP28068 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DMBP28068 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DMBP28068 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DMBP28068 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DMBP28068 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DMBP28068 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DMBP28068 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DMBP28068 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HLA-DMBP28068 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HLA-DMBP28068 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC19.15■□□□□ 0.66
HLA-DMBP28068 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC19.15■□□□□ 0.66
HLA-DMBP28068 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HLA-DMBP28068 PKM-203ENST00000389093 2279 ntTSL 5 BASIC19.14■□□□□ 0.66
HLA-DMBP28068 MEST-211ENST00000437945 1455 ntTSL 5 BASIC19.14■□□□□ 0.65
HLA-DMBP28068 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HLA-DMBP28068 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HLA-DMBP28068 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HLA-DMBP28068 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC19.13■□□□□ 0.65
HLA-DMBP28068 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.13■□□□□ 0.65
HLA-DMBP28068 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
HLA-DMBP28068 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HLA-DMBP28068 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HLA-DMBP28068 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HLA-DMBP28068 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HLA-DMBP28068 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.12■□□□□ 0.65
HLA-DMBP28068 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HLA-DMBP28068 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HLA-DMBP28068 EI24-212ENST00000615917 1407 ntTSL 2 BASIC19.11■□□□□ 0.65
HLA-DMBP28068 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HLA-DMBP28068 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
HLA-DMBP28068 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HLA-DMBP28068 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.09■□□□□ 0.65
HLA-DMBP28068 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HLA-DMBP28068 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HLA-DMBP28068 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.09■□□□□ 0.65
HLA-DMBP28068 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HLA-DMBP28068 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC19.09■□□□□ 0.65
HLA-DMBP28068 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC19.09■□□□□ 0.65
HLA-DMBP28068 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HLA-DMBP28068 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
HLA-DMBP28068 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
HLA-DMBP28068 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms