Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ATF4P18848 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ATF4P18848 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.92■□□□□ 0.94
ATF4P18848 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC20.92■□□□□ 0.94
ATF4P18848 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
ATF4P18848 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ATF4P18848 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.92■□□□□ 0.94
ATF4P18848 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
ATF4P18848 CLDN5-201ENST00000403084 2357 ntBASIC20.91■□□□□ 0.94
ATF4P18848 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
ATF4P18848 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATF4P18848 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATF4P18848 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.9■□□□□ 0.94
ATF4P18848 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATF4P18848 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATF4P18848 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ATF4P18848 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATF4P18848 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
ATF4P18848 LINC00543-201ENST00000567234 1845 ntBASIC20.89■□□□□ 0.93
ATF4P18848 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.88■□□□□ 0.93
ATF4P18848 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATF4P18848 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATF4P18848 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC20.88■□□□□ 0.93
ATF4P18848 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
ATF4P18848 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATF4P18848 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
ATF4P18848 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATF4P18848 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATF4P18848 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATF4P18848 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATF4P18848 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.87■□□□□ 0.93
ATF4P18848 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
ATF4P18848 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
ATF4P18848 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
ATF4P18848 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATF4P18848 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATF4P18848 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.87■□□□□ 0.93
ATF4P18848 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.87■□□□□ 0.93
ATF4P18848 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.87■□□□□ 0.93
ATF4P18848 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
ATF4P18848 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ATF4P18848 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ATF4P18848 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ATF4P18848 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ATF4P18848 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ATF4P18848 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
ATF4P18848 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ATF4P18848 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ATF4P18848 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC20.85■□□□□ 0.93
ATF4P18848 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ATF4P18848 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ATF4P18848 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
ATF4P18848 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ATF4P18848 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ATF4P18848 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
ATF4P18848 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ATF4P18848 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ATF4P18848 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
ATF4P18848 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATF4P18848 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATF4P18848 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATF4P18848 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.82■□□□□ 0.92
ATF4P18848 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATF4P18848 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATF4P18848 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATF4P18848 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.81■□□□□ 0.92
ATF4P18848 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ATF4P18848 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
ATF4P18848 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATF4P18848 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.8■□□□□ 0.92
ATF4P18848 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.8■□□□□ 0.92
ATF4P18848 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATF4P18848 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATF4P18848 AL031258.1-201ENST00000623562 325 ntBASIC20.8■□□□□ 0.92
ATF4P18848 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATF4P18848 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
ATF4P18848 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATF4P18848 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATF4P18848 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.79■□□□□ 0.92
ATF4P18848 ST7-AS1-201ENST00000456775 1889 ntBASIC20.79■□□□□ 0.92
ATF4P18848 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ATF4P18848 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.79■□□□□ 0.92
ATF4P18848 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATF4P18848 AC020928.2-201ENST00000588717 2197 ntBASIC20.78■□□□□ 0.92
ATF4P18848 EBPL-203ENST00000378270 579 ntTSL 2 BASIC20.78■□□□□ 0.92
ATF4P18848 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATF4P18848 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATF4P18848 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATF4P18848 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATF4P18848 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
ATF4P18848 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATF4P18848 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATF4P18848 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATF4P18848 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATF4P18848 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATF4P18848 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATF4P18848 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATF4P18848 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.74■□□□□ 0.91
ATF4P18848 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATF4P18848 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms