Protein–RNA interactions for Protein: P11441

UBL4A, Ubiquitin-like protein 4A, humanhuman

Predictions only

Length 157 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBL4AP11441 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.34
UBL4AP11441 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.39■■□□□ 1.33
UBL4AP11441 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.39■■□□□ 1.33
UBL4AP11441 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.39■■□□□ 1.33
UBL4AP11441 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.38■■□□□ 1.33
UBL4AP11441 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.37■■□□□ 1.33
UBL4AP11441 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
UBL4AP11441 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.37■■□□□ 1.33
UBL4AP11441 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.37■■□□□ 1.33
UBL4AP11441 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
UBL4AP11441 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
UBL4AP11441 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
UBL4AP11441 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
UBL4AP11441 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
UBL4AP11441 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.35■■□□□ 1.33
UBL4AP11441 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.34■■□□□ 1.33
UBL4AP11441 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.34■■□□□ 1.33
UBL4AP11441 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
UBL4AP11441 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
UBL4AP11441 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.34■■□□□ 1.33
UBL4AP11441 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
UBL4AP11441 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.33■■□□□ 1.33
UBL4AP11441 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
UBL4AP11441 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
UBL4AP11441 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.32■■□□□ 1.32
UBL4AP11441 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
UBL4AP11441 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
UBL4AP11441 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.32■■□□□ 1.32
UBL4AP11441 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
UBL4AP11441 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.32■■□□□ 1.32
UBL4AP11441 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
UBL4AP11441 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
UBL4AP11441 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
UBL4AP11441 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
UBL4AP11441 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
UBL4AP11441 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UBL4AP11441 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.31■■□□□ 1.32
UBL4AP11441 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UBL4AP11441 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UBL4AP11441 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
UBL4AP11441 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UBL4AP11441 AP002414.2-202ENST00000590929 1450 ntBASIC23.3■■□□□ 1.32
UBL4AP11441 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
UBL4AP11441 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
UBL4AP11441 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
UBL4AP11441 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
UBL4AP11441 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UBL4AP11441 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UBL4AP11441 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UBL4AP11441 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UBL4AP11441 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.26■■□□□ 1.31
UBL4AP11441 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UBL4AP11441 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
UBL4AP11441 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
UBL4AP11441 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
UBL4AP11441 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
UBL4AP11441 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
UBL4AP11441 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.24■■□□□ 1.31
UBL4AP11441 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
UBL4AP11441 LINC01971-201ENST00000617888 1048 ntBASIC23.24■■□□□ 1.31
UBL4AP11441 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
UBL4AP11441 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
UBL4AP11441 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
UBL4AP11441 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
UBL4AP11441 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.22■■□□□ 1.31
UBL4AP11441 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
UBL4AP11441 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
UBL4AP11441 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
UBL4AP11441 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.21■■□□□ 1.31
UBL4AP11441 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.21■■□□□ 1.31
UBL4AP11441 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.21■■□□□ 1.31
UBL4AP11441 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UBL4AP11441 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
UBL4AP11441 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
UBL4AP11441 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
UBL4AP11441 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
UBL4AP11441 AC110285.7-201ENST00000624417 1536 ntBASIC23.2■■□□□ 1.3
UBL4AP11441 ZNRF2P2-203ENST00000454624 420 ntBASIC23.2■■□□□ 1.3
UBL4AP11441 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.2■■□□□ 1.3
UBL4AP11441 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UBL4AP11441 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.19■■□□□ 1.3
UBL4AP11441 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.19■■□□□ 1.3
UBL4AP11441 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
UBL4AP11441 BX255925.1-201ENST00000566954 1854 ntBASIC23.19■■□□□ 1.3
UBL4AP11441 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UBL4AP11441 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
UBL4AP11441 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
UBL4AP11441 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
UBL4AP11441 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.16■■□□□ 1.3
UBL4AP11441 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
UBL4AP11441 LINC01003-201ENST00000564834 1764 ntBASIC23.16■■□□□ 1.3
UBL4AP11441 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
UBL4AP11441 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
UBL4AP11441 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
UBL4AP11441 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.15■■□□□ 1.3
UBL4AP11441 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.15■■□□□ 1.3
UBL4AP11441 ABHD17AP4-201ENST00000411545 909 ntBASIC23.15■■□□□ 1.3
UBL4AP11441 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.15■■□□□ 1.3
UBL4AP11441 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
UBL4AP11441 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms