Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
LIMS3P0CW19 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
LIMS3P0CW19 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.61■■□□□ 1.21
LIMS3P0CW19 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.61■■□□□ 1.21
LIMS3P0CW19 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC22.6■■□□□ 1.21
LIMS3P0CW19 AC091060.1-201ENST00000623524 1766 ntBASIC22.6■■□□□ 1.21
LIMS3P0CW19 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.59■■□□□ 1.21
LIMS3P0CW19 DENR-202ENST00000455982 1052 ntTSL 5 BASIC22.59■■□□□ 1.21
LIMS3P0CW19 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
LIMS3P0CW19 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
LIMS3P0CW19 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
LIMS3P0CW19 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
LIMS3P0CW19 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
LIMS3P0CW19 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
LIMS3P0CW19 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC22.58■■□□□ 1.21
LIMS3P0CW19 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
LIMS3P0CW19 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
LIMS3P0CW19 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
LIMS3P0CW19 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LIMS3P0CW19 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
LIMS3P0CW19 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LIMS3P0CW19 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
LIMS3P0CW19 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC22.56■■□□□ 1.2
LIMS3P0CW19 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
LIMS3P0CW19 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC22.56■■□□□ 1.2
LIMS3P0CW19 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LIMS3P0CW19 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
LIMS3P0CW19 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LIMS3P0CW19 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LIMS3P0CW19 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
LIMS3P0CW19 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LIMS3P0CW19 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LIMS3P0CW19 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
LIMS3P0CW19 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LIMS3P0CW19 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
LIMS3P0CW19 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC22.53■■□□□ 1.2
LIMS3P0CW19 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.52■■□□□ 1.2
LIMS3P0CW19 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LIMS3P0CW19 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
LIMS3P0CW19 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LIMS3P0CW19 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
LIMS3P0CW19 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
LIMS3P0CW19 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
LIMS3P0CW19 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.51■■□□□ 1.19
LIMS3P0CW19 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LIMS3P0CW19 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LIMS3P0CW19 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
LIMS3P0CW19 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LIMS3P0CW19 SETD8P1-201ENST00000623146 1180 ntBASIC22.5■■□□□ 1.19
LIMS3P0CW19 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.5■■□□□ 1.19
LIMS3P0CW19 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LIMS3P0CW19 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LIMS3P0CW19 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LIMS3P0CW19 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LIMS3P0CW19 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC22.48■■□□□ 1.19
LIMS3P0CW19 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LIMS3P0CW19 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC22.48■■□□□ 1.19
LIMS3P0CW19 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LIMS3P0CW19 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.48■■□□□ 1.19
LIMS3P0CW19 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
LIMS3P0CW19 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
LIMS3P0CW19 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LIMS3P0CW19 RARRES2P7-201ENST00000567349 469 ntBASIC22.47■■□□□ 1.19
LIMS3P0CW19 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LIMS3P0CW19 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC22.47■■□□□ 1.19
LIMS3P0CW19 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
LIMS3P0CW19 AC018358.1-201ENST00000631079 1402 ntBASIC22.46■■□□□ 1.19
LIMS3P0CW19 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC22.46■■□□□ 1.19
LIMS3P0CW19 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.45■■□□□ 1.18
LIMS3P0CW19 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LIMS3P0CW19 EBPL-202ENST00000378268 680 ntTSL 3 BASIC22.45■■□□□ 1.18
LIMS3P0CW19 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
LIMS3P0CW19 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
LIMS3P0CW19 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.44■■□□□ 1.18
LIMS3P0CW19 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
LIMS3P0CW19 AL391121.1-201ENST00000607967 1349 ntBASIC22.44■■□□□ 1.18
LIMS3P0CW19 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
LIMS3P0CW19 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LIMS3P0CW19 AC145676.1-201ENST00000514988 2004 ntBASIC22.43■■□□□ 1.18
LIMS3P0CW19 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
LIMS3P0CW19 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
LIMS3P0CW19 AC020928.2-201ENST00000588717 2197 ntBASIC22.42■■□□□ 1.18
LIMS3P0CW19 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
LIMS3P0CW19 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LIMS3P0CW19 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
LIMS3P0CW19 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LIMS3P0CW19 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LIMS3P0CW19 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.41■■□□□ 1.18
LIMS3P0CW19 MEST-211ENST00000437945 1455 ntTSL 5 BASIC22.4■■□□□ 1.18
LIMS3P0CW19 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
LIMS3P0CW19 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.4■■□□□ 1.18
LIMS3P0CW19 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
LIMS3P0CW19 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.18
LIMS3P0CW19 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC22.39■■□□□ 1.17
LIMS3P0CW19 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
LIMS3P0CW19 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.39■■□□□ 1.17
LIMS3P0CW19 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC22.38■■□□□ 1.17
LIMS3P0CW19 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.38■■□□□ 1.17
LIMS3P0CW19 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LIMS3P0CW19 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms