Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
HLA-DQB2P05538 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
HLA-DQB2P05538 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
HLA-DQB2P05538 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
HLA-DQB2P05538 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
HLA-DQB2P05538 AP002414.2-202ENST00000590929 1450 ntBASIC25.88■■□□□ 1.73
HLA-DQB2P05538 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.88■■□□□ 1.73
HLA-DQB2P05538 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
HLA-DQB2P05538 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HLA-DQB2P05538 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC25.87■■□□□ 1.73
HLA-DQB2P05538 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HLA-DQB2P05538 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HLA-DQB2P05538 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
HLA-DQB2P05538 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.86■■□□□ 1.73
HLA-DQB2P05538 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
HLA-DQB2P05538 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
HLA-DQB2P05538 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
HLA-DQB2P05538 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.84■■□□□ 1.73
HLA-DQB2P05538 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
HLA-DQB2P05538 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
HLA-DQB2P05538 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.83■■□□□ 1.73
HLA-DQB2P05538 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
HLA-DQB2P05538 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
HLA-DQB2P05538 AC110285.7-201ENST00000624417 1536 ntBASIC25.82■■□□□ 1.72
HLA-DQB2P05538 DUX4L11-201ENST00000611504 1267 ntBASIC25.81■■□□□ 1.72
HLA-DQB2P05538 DUX4L12-201ENST00000614593 1267 ntBASIC25.81■■□□□ 1.72
HLA-DQB2P05538 DUX4L14-201ENST00000621227 1267 ntBASIC25.81■■□□□ 1.72
HLA-DQB2P05538 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.81■■□□□ 1.72
HLA-DQB2P05538 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DQB2P05538 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC25.81■■□□□ 1.72
HLA-DQB2P05538 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DQB2P05538 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DQB2P05538 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
HLA-DQB2P05538 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
HLA-DQB2P05538 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
HLA-DQB2P05538 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
HLA-DQB2P05538 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.8■■□□□ 1.72
HLA-DQB2P05538 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
HLA-DQB2P05538 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
HLA-DQB2P05538 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
HLA-DQB2P05538 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
HLA-DQB2P05538 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC25.79■■□□□ 1.72
HLA-DQB2P05538 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC25.78■■□□□ 1.72
HLA-DQB2P05538 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
HLA-DQB2P05538 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
HLA-DQB2P05538 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
HLA-DQB2P05538 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.77■■□□□ 1.72
HLA-DQB2P05538 DUX4L13-201ENST00000554103 1267 ntBASIC25.77■■□□□ 1.72
HLA-DQB2P05538 DUX4L15-201ENST00000611059 1267 ntBASIC25.77■■□□□ 1.72
HLA-DQB2P05538 DUX4L23-201ENST00000615195 1269 ntBASIC25.77■■□□□ 1.72
HLA-DQB2P05538 DUX4L24-201ENST00000617576 1269 ntBASIC25.77■■□□□ 1.72
HLA-DQB2P05538 DUX4L22-201ENST00000618238 1269 ntBASIC25.77■■□□□ 1.72
HLA-DQB2P05538 DUX4L20-201ENST00000619712 1269 ntBASIC25.77■■□□□ 1.72
HLA-DQB2P05538 DUX4L21-201ENST00000622058 1269 ntBASIC25.77■■□□□ 1.72
HLA-DQB2P05538 DUX4L10-201ENST00000622460 1267 ntBASIC25.77■■□□□ 1.72
HLA-DQB2P05538 DUX4L25-201ENST00000624915 1269 ntBASIC25.77■■□□□ 1.72
HLA-DQB2P05538 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.77■■□□□ 1.72
HLA-DQB2P05538 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
HLA-DQB2P05538 PEX7-203ENST00000541292 945 ntTSL 5 BASIC25.76■■□□□ 1.71
HLA-DQB2P05538 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
HLA-DQB2P05538 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
HLA-DQB2P05538 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
HLA-DQB2P05538 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
HLA-DQB2P05538 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.75■■□□□ 1.71
HLA-DQB2P05538 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
HLA-DQB2P05538 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
HLA-DQB2P05538 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
HLA-DQB2P05538 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.74■■□□□ 1.71
HLA-DQB2P05538 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
HLA-DQB2P05538 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
HLA-DQB2P05538 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
HLA-DQB2P05538 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
HLA-DQB2P05538 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
HLA-DQB2P05538 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.72■■□□□ 1.71
HLA-DQB2P05538 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.72■■□□□ 1.71
HLA-DQB2P05538 LINC01003-201ENST00000564834 1764 ntBASIC25.72■■□□□ 1.71
HLA-DQB2P05538 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
HLA-DQB2P05538 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC25.71■■□□□ 1.71
HLA-DQB2P05538 BX255925.1-201ENST00000566954 1854 ntBASIC25.71■■□□□ 1.71
HLA-DQB2P05538 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.71■■□□□ 1.71
HLA-DQB2P05538 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.71■■□□□ 1.71
HLA-DQB2P05538 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC25.71■■□□□ 1.71
HLA-DQB2P05538 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
HLA-DQB2P05538 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
HLA-DQB2P05538 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
HLA-DQB2P05538 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
HLA-DQB2P05538 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
HLA-DQB2P05538 AC018358.1-201ENST00000631079 1402 ntBASIC25.7■■□□□ 1.7
HLA-DQB2P05538 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
HLA-DQB2P05538 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
HLA-DQB2P05538 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
HLA-DQB2P05538 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
HLA-DQB2P05538 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.68■■□□□ 1.7
HLA-DQB2P05538 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
HLA-DQB2P05538 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
HLA-DQB2P05538 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
HLA-DQB2P05538 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
HLA-DQB2P05538 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
HLA-DQB2P05538 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC25.68■■□□□ 1.7
HLA-DQB2P05538 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms