Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Gm14523-201ENSMUST00000117260 558 ntBASIC19.86■□□□□ 0.77
Cldn1O88551 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Cldn1O88551 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cldn1O88551 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cldn1O88551 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cldn1O88551 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cldn1O88551 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cldn1O88551 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Cldn1O88551 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cldn1O88551 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Cldn1O88551 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cldn1O88551 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Cldn1O88551 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cldn1O88551 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.77
Cldn1O88551 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cldn1O88551 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cldn1O88551 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Cldn1O88551 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cldn1O88551 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cldn1O88551 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cldn1O88551 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Cldn1O88551 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cldn1O88551 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC19.8■□□□□ 0.76
Cldn1O88551 Gm5812-201ENSMUST00000061073 957 ntBASIC19.8■□□□□ 0.76
Cldn1O88551 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cldn1O88551 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cldn1O88551 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cldn1O88551 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.79■□□□□ 0.76
Cldn1O88551 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cldn1O88551 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cldn1O88551 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Cldn1O88551 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Cldn1O88551 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cldn1O88551 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Cldn1O88551 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cldn1O88551 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cldn1O88551 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cldn1O88551 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cldn1O88551 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.75■□□□□ 0.75
Cldn1O88551 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cldn1O88551 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cldn1O88551 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC19.74■□□□□ 0.75
Cldn1O88551 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Cldn1O88551 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC19.74■□□□□ 0.75
Cldn1O88551 Gm37136-201ENSMUST00000194368 194 ntBASIC19.74■□□□□ 0.75
Cldn1O88551 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cldn1O88551 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cldn1O88551 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC19.74■□□□□ 0.75
Cldn1O88551 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cldn1O88551 Gm12818-201ENSMUST00000117562 1349 ntBASIC19.74■□□□□ 0.75
Cldn1O88551 Gm13889-201ENSMUST00000099689 1386 ntBASIC19.73■□□□□ 0.75
Cldn1O88551 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cldn1O88551 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Cldn1O88551 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Cldn1O88551 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cldn1O88551 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cldn1O88551 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cldn1O88551 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cldn1O88551 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.72■□□□□ 0.75
Cldn1O88551 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cldn1O88551 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cldn1O88551 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Cldn1O88551 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cldn1O88551 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cldn1O88551 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cldn1O88551 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cldn1O88551 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC19.7■□□□□ 0.74
Cldn1O88551 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cldn1O88551 AC151971.4-201ENSMUST00000214717 704 ntBASIC19.7■□□□□ 0.74
Cldn1O88551 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cldn1O88551 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cldn1O88551 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC19.7■□□□□ 0.74
Cldn1O88551 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cldn1O88551 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC19.69■□□□□ 0.74
Cldn1O88551 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Cldn1O88551 Gm9910-201ENSMUST00000195385 1550 ntBASIC19.69■□□□□ 0.74
Cldn1O88551 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Cldn1O88551 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Cldn1O88551 Gm6206-201ENSMUST00000133472 2199 ntBASIC19.68■□□□□ 0.74
Cldn1O88551 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cldn1O88551 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cldn1O88551 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cldn1O88551 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cldn1O88551 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC19.67■□□□□ 0.74
Cldn1O88551 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
Cldn1O88551 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cldn1O88551 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Cldn1O88551 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cldn1O88551 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cldn1O88551 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC19.66■□□□□ 0.74
Cldn1O88551 Gm5921-201ENSMUST00000075898 882 ntBASIC19.66■□□□□ 0.74
Cldn1O88551 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cldn1O88551 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cldn1O88551 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cldn1O88551 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cldn1O88551 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cldn1O88551 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC19.65■□□□□ 0.74
Cldn1O88551 Gm10420-201ENSMUST00000121713 882 ntBASIC19.65■□□□□ 0.74
Cldn1O88551 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC19.65■□□□□ 0.74
Cldn1O88551 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms