Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cops4O88544 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cops4O88544 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cops4O88544 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.33■■□□□ 1
Cops4O88544 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Cops4O88544 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cops4O88544 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Cops4O88544 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC21.31■■□□□ 1
Cops4O88544 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cops4O88544 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cops4O88544 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cops4O88544 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cops4O88544 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Cops4O88544 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
Cops4O88544 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Cops4O88544 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cops4O88544 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
Cops4O88544 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cops4O88544 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cops4O88544 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Cops4O88544 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cops4O88544 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC21.28■■□□□ 1
Cops4O88544 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cops4O88544 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.27■■□□□ 1
Cops4O88544 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cops4O88544 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cops4O88544 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cops4O88544 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cops4O88544 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cops4O88544 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cops4O88544 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Cops4O88544 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Cops4O88544 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cops4O88544 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cops4O88544 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cops4O88544 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cops4O88544 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cops4O88544 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cops4O88544 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Cops4O88544 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC21.23■□□□□ 0.99
Cops4O88544 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cops4O88544 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cops4O88544 Zfp131-205ENSMUST00000223812 663 ntBASIC21.22■□□□□ 0.99
Cops4O88544 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cops4O88544 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Cops4O88544 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Cops4O88544 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cops4O88544 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Cops4O88544 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cops4O88544 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
Cops4O88544 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC21.2■□□□□ 0.98
Cops4O88544 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.19■□□□□ 0.98
Cops4O88544 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cops4O88544 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cops4O88544 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cops4O88544 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cops4O88544 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cops4O88544 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC21.18■□□□□ 0.98
Cops4O88544 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Cops4O88544 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cops4O88544 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
Cops4O88544 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cops4O88544 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Cops4O88544 Gm43863-201ENSMUST00000203822 1192 ntBASIC21.17■□□□□ 0.98
Cops4O88544 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cops4O88544 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cops4O88544 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Cops4O88544 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC21.16■□□□□ 0.98
Cops4O88544 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cops4O88544 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cops4O88544 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cops4O88544 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cops4O88544 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cops4O88544 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Cops4O88544 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cops4O88544 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cops4O88544 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Cops4O88544 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cops4O88544 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Cops4O88544 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cops4O88544 H3f3aos-201ENSMUST00000097448 2905 ntBASIC21.14■□□□□ 0.97
Cops4O88544 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cops4O88544 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cops4O88544 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cops4O88544 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cops4O88544 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cops4O88544 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cops4O88544 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Cops4O88544 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cops4O88544 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cops4O88544 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC21.13■□□□□ 0.97
Cops4O88544 Tdp2-203ENSMUST00000223804 1136 ntBASIC21.13■□□□□ 0.97
Cops4O88544 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cops4O88544 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cops4O88544 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Cops4O88544 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cops4O88544 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cops4O88544 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cops4O88544 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC21.12■□□□□ 0.97
Cops4O88544 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 70.3 ms