Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.68■■□□□ 1.38
HMGN4O00479 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.68■■□□□ 1.38
HMGN4O00479 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGN4O00479 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23.68■■□□□ 1.38
HMGN4O00479 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGN4O00479 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGN4O00479 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGN4O00479 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
HMGN4O00479 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGN4O00479 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGN4O00479 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGN4O00479 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.66■■□□□ 1.38
HMGN4O00479 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGN4O00479 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.65■■□□□ 1.38
HMGN4O00479 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGN4O00479 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.65■■□□□ 1.38
HMGN4O00479 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.65■■□□□ 1.38
HMGN4O00479 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGN4O00479 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGN4O00479 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGN4O00479 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGN4O00479 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
HMGN4O00479 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HMGN4O00479 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
HMGN4O00479 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGN4O00479 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.63■■□□□ 1.37
HMGN4O00479 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
HMGN4O00479 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
HMGN4O00479 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC23.62■■□□□ 1.37
HMGN4O00479 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.62■■□□□ 1.37
HMGN4O00479 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HMGN4O00479 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.61■■□□□ 1.37
HMGN4O00479 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGN4O00479 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC23.61■■□□□ 1.37
HMGN4O00479 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
HMGN4O00479 AC044849.2-201ENST00000606596 710 ntBASIC23.61■■□□□ 1.37
HMGN4O00479 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGN4O00479 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HMGN4O00479 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.6■■□□□ 1.37
HMGN4O00479 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
HMGN4O00479 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.6■■□□□ 1.37
HMGN4O00479 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGN4O00479 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGN4O00479 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGN4O00479 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HMGN4O00479 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
HMGN4O00479 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.59■■□□□ 1.37
HMGN4O00479 AC018358.1-201ENST00000631079 1402 ntBASIC23.59■■□□□ 1.37
HMGN4O00479 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HMGN4O00479 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HMGN4O00479 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
HMGN4O00479 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.36
HMGN4O00479 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGN4O00479 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HMGN4O00479 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGN4O00479 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.56■■□□□ 1.36
HMGN4O00479 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGN4O00479 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGN4O00479 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HMGN4O00479 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
HMGN4O00479 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.56■■□□□ 1.36
HMGN4O00479 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.56■■□□□ 1.36
HMGN4O00479 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HMGN4O00479 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
HMGN4O00479 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
HMGN4O00479 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
HMGN4O00479 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
HMGN4O00479 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
HMGN4O00479 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
HMGN4O00479 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
HMGN4O00479 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HMGN4O00479 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGN4O00479 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
HMGN4O00479 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC23.53■■□□□ 1.36
HMGN4O00479 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HMGN4O00479 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGN4O00479 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.52■■□□□ 1.36
HMGN4O00479 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
HMGN4O00479 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
HMGN4O00479 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGN4O00479 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HMGN4O00479 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HMGN4O00479 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGN4O00479 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.5■■□□□ 1.35
HMGN4O00479 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.5■■□□□ 1.35
HMGN4O00479 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
HMGN4O00479 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
HMGN4O00479 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HMGN4O00479 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
HMGN4O00479 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.49■■□□□ 1.35
HMGN4O00479 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.49■■□□□ 1.35
HMGN4O00479 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
HMGN4O00479 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
HMGN4O00479 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
HMGN4O00479 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.48■■□□□ 1.35
HMGN4O00479 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.48■■□□□ 1.35
HMGN4O00479 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.47■■□□□ 1.35
HMGN4O00479 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
HMGN4O00479 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
HMGN4O00479 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.46■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms