Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC29.43■■■□□ 2.3
SMCHD1A6NHR9 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SMCHD1A6NHR9 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
SMCHD1A6NHR9 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
SMCHD1A6NHR9 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
SMCHD1A6NHR9 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
SMCHD1A6NHR9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SMCHD1A6NHR9 AC100797.4-201ENST00000631653 1827 ntBASIC29.41■■■□□ 2.3
SMCHD1A6NHR9 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
SMCHD1A6NHR9 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
SMCHD1A6NHR9 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
SMCHD1A6NHR9 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
SMCHD1A6NHR9 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC29.4■■■□□ 2.3
SMCHD1A6NHR9 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
SMCHD1A6NHR9 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
SMCHD1A6NHR9 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC29.4■■■□□ 2.3
SMCHD1A6NHR9 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SMCHD1A6NHR9 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
SMCHD1A6NHR9 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
SMCHD1A6NHR9 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SMCHD1A6NHR9 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC29.38■■■□□ 2.29
SMCHD1A6NHR9 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC29.38■■■□□ 2.29
SMCHD1A6NHR9 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SMCHD1A6NHR9 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
SMCHD1A6NHR9 AC110285.7-201ENST00000624417 1536 ntBASIC29.37■■■□□ 2.29
SMCHD1A6NHR9 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.37■■■□□ 2.29
SMCHD1A6NHR9 CEP120-209ENST00000515110 606 ntTSL 3 BASIC29.37■■■□□ 2.29
SMCHD1A6NHR9 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC29.37■■■□□ 2.29
SMCHD1A6NHR9 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC29.37■■■□□ 2.29
SMCHD1A6NHR9 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC29.36■■■□□ 2.29
SMCHD1A6NHR9 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.35■■■□□ 2.29
SMCHD1A6NHR9 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
SMCHD1A6NHR9 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.35■■■□□ 2.29
SMCHD1A6NHR9 RPS2-210ENST00000530225 765 ntTSL 2 BASIC29.35■■■□□ 2.29
SMCHD1A6NHR9 MEST-211ENST00000437945 1455 ntTSL 5 BASIC29.35■■■□□ 2.29
SMCHD1A6NHR9 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC29.34■■■□□ 2.29
SMCHD1A6NHR9 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.34■■■□□ 2.29
SMCHD1A6NHR9 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
SMCHD1A6NHR9 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC29.33■■■□□ 2.29
SMCHD1A6NHR9 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
SMCHD1A6NHR9 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.32■■■□□ 2.28
SMCHD1A6NHR9 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC29.32■■■□□ 2.28
SMCHD1A6NHR9 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC29.31■■■□□ 2.28
SMCHD1A6NHR9 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SMCHD1A6NHR9 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SMCHD1A6NHR9 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SMCHD1A6NHR9 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SMCHD1A6NHR9 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC29.3■■■□□ 2.28
SMCHD1A6NHR9 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SMCHD1A6NHR9 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC29.3■■■□□ 2.28
SMCHD1A6NHR9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC29.3■■■□□ 2.28
SMCHD1A6NHR9 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
SMCHD1A6NHR9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.28
SMCHD1A6NHR9 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SMCHD1A6NHR9 RNF126P1-201ENST00000567452 1320 ntBASIC29.29■■■□□ 2.28
SMCHD1A6NHR9 CHST11-203ENST00000547956 936 ntTSL 2 BASIC29.29■■■□□ 2.28
SMCHD1A6NHR9 AL139393.2-201ENST00000608721 2025 ntBASIC29.29■■■□□ 2.28
SMCHD1A6NHR9 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
SMCHD1A6NHR9 AC008813.1-201ENST00000536597 885 ntBASIC29.28■■■□□ 2.28
SMCHD1A6NHR9 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.28■■■□□ 2.28
SMCHD1A6NHR9 ABCB10P3-201ENST00000561950 2166 ntBASIC29.28■■■□□ 2.28
SMCHD1A6NHR9 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC29.28■■■□□ 2.28
SMCHD1A6NHR9 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SMCHD1A6NHR9 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC29.27■■■□□ 2.28
SMCHD1A6NHR9 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SMCHD1A6NHR9 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SMCHD1A6NHR9 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
SMCHD1A6NHR9 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SMCHD1A6NHR9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC29.26■■■□□ 2.27
SMCHD1A6NHR9 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
SMCHD1A6NHR9 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SMCHD1A6NHR9 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
SMCHD1A6NHR9 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SMCHD1A6NHR9 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
SMCHD1A6NHR9 AC060814.1-201ENST00000554326 538 ntBASIC29.24■■■□□ 2.27
SMCHD1A6NHR9 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
SMCHD1A6NHR9 MIR219A2-201ENST00000608502 1504 ntBASIC29.24■■■□□ 2.27
SMCHD1A6NHR9 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SMCHD1A6NHR9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC29.23■■■□□ 2.27
SMCHD1A6NHR9 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
SMCHD1A6NHR9 NTF6A-201ENST00000591175 560 ntBASIC29.23■■■□□ 2.27
SMCHD1A6NHR9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC29.22■■■□□ 2.27
SMCHD1A6NHR9 AC022413.1-201ENST00000624602 984 ntBASIC29.22■■■□□ 2.27
SMCHD1A6NHR9 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC29.21■■■□□ 2.27
SMCHD1A6NHR9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
SMCHD1A6NHR9 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
SMCHD1A6NHR9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
SMCHD1A6NHR9 AP004833.2-201ENST00000532228 1454 ntBASIC29.2■■■□□ 2.27
SMCHD1A6NHR9 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC29.2■■■□□ 2.27
SMCHD1A6NHR9 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC29.2■■■□□ 2.27
SMCHD1A6NHR9 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC29.2■■■□□ 2.27
SMCHD1A6NHR9 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC29.2■■■□□ 2.27
SMCHD1A6NHR9 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC29.2■■■□□ 2.26
SMCHD1A6NHR9 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
SMCHD1A6NHR9 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC29.19■■■□□ 2.26
SMCHD1A6NHR9 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SMCHD1A6NHR9 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SMCHD1A6NHR9 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
SMCHD1A6NHR9 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
SMCHD1A6NHR9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms