Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col6a5A6H584 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC18.42■□□□□ 0.54
Col6a5A6H584 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col6a5A6H584 Gm9959-201ENSMUST00000068277 390 ntBASIC18.41■□□□□ 0.54
Col6a5A6H584 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col6a5A6H584 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col6a5A6H584 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col6a5A6H584 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col6a5A6H584 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col6a5A6H584 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col6a5A6H584 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC18.39■□□□□ 0.53
Col6a5A6H584 Gm9910-201ENSMUST00000195385 1550 ntBASIC18.39■□□□□ 0.53
Col6a5A6H584 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col6a5A6H584 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col6a5A6H584 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col6a5A6H584 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col6a5A6H584 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col6a5A6H584 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col6a5A6H584 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Col6a5A6H584 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col6a5A6H584 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col6a5A6H584 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Col6a5A6H584 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC18.36■□□□□ 0.53
Col6a5A6H584 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col6a5A6H584 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a5A6H584 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a5A6H584 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col6a5A6H584 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a5A6H584 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC18.34■□□□□ 0.53
Col6a5A6H584 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a5A6H584 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col6a5A6H584 Gm30023-201ENSMUST00000197970 889 ntBASIC18.34■□□□□ 0.53
Col6a5A6H584 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col6a5A6H584 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Col6a5A6H584 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col6a5A6H584 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col6a5A6H584 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Col6a5A6H584 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col6a5A6H584 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC18.32■□□□□ 0.52
Col6a5A6H584 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a5A6H584 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a5A6H584 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC18.31■□□□□ 0.52
Col6a5A6H584 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.31■□□□□ 0.52
Col6a5A6H584 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col6a5A6H584 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC18.3■□□□□ 0.52
Col6a5A6H584 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col6a5A6H584 Gm13889-201ENSMUST00000099689 1386 ntBASIC18.29■□□□□ 0.52
Col6a5A6H584 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col6a5A6H584 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col6a5A6H584 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col6a5A6H584 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col6a5A6H584 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col6a5A6H584 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Col6a5A6H584 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col6a5A6H584 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col6a5A6H584 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Col6a5A6H584 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col6a5A6H584 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC18.26■□□□□ 0.51
Col6a5A6H584 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC18.26■□□□□ 0.51
Col6a5A6H584 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC18.26■□□□□ 0.51
Col6a5A6H584 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col6a5A6H584 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Col6a5A6H584 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Col6a5A6H584 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC18.25■□□□□ 0.51
Col6a5A6H584 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col6a5A6H584 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col6a5A6H584 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col6a5A6H584 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col6a5A6H584 Gm43566-201ENSMUST00000196851 808 ntBASIC18.24■□□□□ 0.51
Col6a5A6H584 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC18.22■□□□□ 0.51
Col6a5A6H584 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
Col6a5A6H584 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC18.22■□□□□ 0.51
Col6a5A6H584 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col6a5A6H584 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a5A6H584 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC18.21■□□□□ 0.51
Col6a5A6H584 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a5A6H584 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a5A6H584 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a5A6H584 Nsd1-203ENSMUST00000224156 1149 ntBASIC18.21■□□□□ 0.51
Col6a5A6H584 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a5A6H584 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Col6a5A6H584 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a5A6H584 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.21■□□□□ 0.51
Col6a5A6H584 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a5A6H584 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a5A6H584 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC18.2■□□□□ 0.5
Col6a5A6H584 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a5A6H584 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a5A6H584 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a5A6H584 Gm45444-201ENSMUST00000211394 898 ntBASIC18.2■□□□□ 0.5
Col6a5A6H584 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a5A6H584 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a5A6H584 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a5A6H584 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a5A6H584 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Col6a5A6H584 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a5A6H584 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a5A6H584 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Col6a5A6H584 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a5A6H584 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 72.8 ms