Protein–RNA interactions for Protein: A0A0B4J1K2

Trav9-4, T cell receptor alpha variable 9-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9-4A0A0B4J1K2 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Trav9-4A0A0B4J1K2 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav9-4A0A0B4J1K2 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC17.4■□□□□ 0.38
Trav9-4A0A0B4J1K2 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC17.4■□□□□ 0.38
Trav9-4A0A0B4J1K2 Gm7432-201ENSMUST00000210343 879 ntBASIC17.4■□□□□ 0.38
Trav9-4A0A0B4J1K2 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
Trav9-4A0A0B4J1K2 AC122428.3-201ENSMUST00000215551 2290 ntBASIC17.4■□□□□ 0.38
Trav9-4A0A0B4J1K2 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trav9-4A0A0B4J1K2 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav9-4A0A0B4J1K2 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav9-4A0A0B4J1K2 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC17.38■□□□□ 0.37
Trav9-4A0A0B4J1K2 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trav9-4A0A0B4J1K2 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav9-4A0A0B4J1K2 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav9-4A0A0B4J1K2 AC131739.1-201ENSMUST00000221692 1245 ntBASIC17.38■□□□□ 0.37
Trav9-4A0A0B4J1K2 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC17.38■□□□□ 0.37
Trav9-4A0A0B4J1K2 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav9-4A0A0B4J1K2 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav9-4A0A0B4J1K2 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav9-4A0A0B4J1K2 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav9-4A0A0B4J1K2 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Trav9-4A0A0B4J1K2 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trav9-4A0A0B4J1K2 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav9-4A0A0B4J1K2 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trav9-4A0A0B4J1K2 AC153890.1-201ENSMUST00000220021 2469 ntBASIC17.36■□□□□ 0.37
Trav9-4A0A0B4J1K2 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav9-4A0A0B4J1K2 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
Trav9-4A0A0B4J1K2 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC17.35■□□□□ 0.37
Trav9-4A0A0B4J1K2 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav9-4A0A0B4J1K2 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav9-4A0A0B4J1K2 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav9-4A0A0B4J1K2 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav9-4A0A0B4J1K2 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav9-4A0A0B4J1K2 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC17.34■□□□□ 0.37
Trav9-4A0A0B4J1K2 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav9-4A0A0B4J1K2 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav9-4A0A0B4J1K2 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav9-4A0A0B4J1K2 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav9-4A0A0B4J1K2 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.37
Trav9-4A0A0B4J1K2 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav9-4A0A0B4J1K2 Gm11599-201ENSMUST00000118720 878 ntBASIC17.33■□□□□ 0.36
Trav9-4A0A0B4J1K2 Gm37136-201ENSMUST00000194368 194 ntBASIC17.33■□□□□ 0.36
Trav9-4A0A0B4J1K2 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav9-4A0A0B4J1K2 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trav9-4A0A0B4J1K2 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav9-4A0A0B4J1K2 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Trav9-4A0A0B4J1K2 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trav9-4A0A0B4J1K2 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav9-4A0A0B4J1K2 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav9-4A0A0B4J1K2 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trav9-4A0A0B4J1K2 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav9-4A0A0B4J1K2 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav9-4A0A0B4J1K2 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav9-4A0A0B4J1K2 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC17.3■□□□□ 0.36
Trav9-4A0A0B4J1K2 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Trav9-4A0A0B4J1K2 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC17.29■□□□□ 0.36
Trav9-4A0A0B4J1K2 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav9-4A0A0B4J1K2 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav9-4A0A0B4J1K2 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav9-4A0A0B4J1K2 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav9-4A0A0B4J1K2 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trav9-4A0A0B4J1K2 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav9-4A0A0B4J1K2 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav9-4A0A0B4J1K2 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav9-4A0A0B4J1K2 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC17.27■□□□□ 0.36
Trav9-4A0A0B4J1K2 Gm14121-201ENSMUST00000121441 1380 ntBASIC17.27■□□□□ 0.35
Trav9-4A0A0B4J1K2 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav9-4A0A0B4J1K2 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav9-4A0A0B4J1K2 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
Trav9-4A0A0B4J1K2 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Trav9-4A0A0B4J1K2 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav9-4A0A0B4J1K2 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trav9-4A0A0B4J1K2 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav9-4A0A0B4J1K2 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC17.25■□□□□ 0.35
Trav9-4A0A0B4J1K2 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trav9-4A0A0B4J1K2 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav9-4A0A0B4J1K2 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trav9-4A0A0B4J1K2 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trav9-4A0A0B4J1K2 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trav9-4A0A0B4J1K2 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav9-4A0A0B4J1K2 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav9-4A0A0B4J1K2 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trav9-4A0A0B4J1K2 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
Trav9-4A0A0B4J1K2 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav9-4A0A0B4J1K2 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav9-4A0A0B4J1K2 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC17.21■□□□□ 0.34
Trav9-4A0A0B4J1K2 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav9-4A0A0B4J1K2 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav9-4A0A0B4J1K2 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav9-4A0A0B4J1K2 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Trav9-4A0A0B4J1K2 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav9-4A0A0B4J1K2 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav9-4A0A0B4J1K2 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav9-4A0A0B4J1K2 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav9-4A0A0B4J1K2 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav9-4A0A0B4J1K2 Gm4799-201ENSMUST00000095396 657 ntBASIC17.18■□□□□ 0.34
Trav9-4A0A0B4J1K2 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav9-4A0A0B4J1K2 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC17.17■□□□□ 0.34
Trav9-4A0A0B4J1K2 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
Trav9-4A0A0B4J1K2 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms