Protein–RNA interactions for Protein: A0A075B6B4

Trav6-4, T cell receptor alpha variable 6-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-4A0A075B6B4 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
Trav6-4A0A075B6B4 AC131739.1-201ENSMUST00000221692 1245 ntBASIC17.86■□□□□ 0.45
Trav6-4A0A075B6B4 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6-4A0A075B6B4 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6-4A0A075B6B4 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Trav6-4A0A075B6B4 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6-4A0A075B6B4 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6-4A0A075B6B4 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6-4A0A075B6B4 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC17.85■□□□□ 0.45
Trav6-4A0A075B6B4 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Trav6-4A0A075B6B4 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6-4A0A075B6B4 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6-4A0A075B6B4 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6-4A0A075B6B4 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6-4A0A075B6B4 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6-4A0A075B6B4 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6-4A0A075B6B4 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6-4A0A075B6B4 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.45
Trav6-4A0A075B6B4 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav6-4A0A075B6B4 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trav6-4A0A075B6B4 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav6-4A0A075B6B4 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6-4A0A075B6B4 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC17.81■□□□□ 0.44
Trav6-4A0A075B6B4 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC17.81■□□□□ 0.44
Trav6-4A0A075B6B4 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC17.8■□□□□ 0.44
Trav6-4A0A075B6B4 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6-4A0A075B6B4 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6-4A0A075B6B4 Gm37136-201ENSMUST00000194368 194 ntBASIC17.79■□□□□ 0.44
Trav6-4A0A075B6B4 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6-4A0A075B6B4 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6-4A0A075B6B4 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6-4A0A075B6B4 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6-4A0A075B6B4 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trav6-4A0A075B6B4 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6-4A0A075B6B4 AC122428.3-201ENSMUST00000215551 2290 ntBASIC17.78■□□□□ 0.44
Trav6-4A0A075B6B4 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6-4A0A075B6B4 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.78■□□□□ 0.44
Trav6-4A0A075B6B4 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6-4A0A075B6B4 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Trav6-4A0A075B6B4 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav6-4A0A075B6B4 Gm11599-201ENSMUST00000118720 878 ntBASIC17.77■□□□□ 0.44
Trav6-4A0A075B6B4 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trav6-4A0A075B6B4 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trav6-4A0A075B6B4 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Trav6-4A0A075B6B4 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav6-4A0A075B6B4 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC17.75■□□□□ 0.43
Trav6-4A0A075B6B4 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav6-4A0A075B6B4 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav6-4A0A075B6B4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav6-4A0A075B6B4 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trav6-4A0A075B6B4 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trav6-4A0A075B6B4 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC17.73■□□□□ 0.43
Trav6-4A0A075B6B4 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trav6-4A0A075B6B4 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trav6-4A0A075B6B4 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-4A0A075B6B4 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
Trav6-4A0A075B6B4 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-4A0A075B6B4 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-4A0A075B6B4 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-4A0A075B6B4 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-4A0A075B6B4 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-4A0A075B6B4 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-4A0A075B6B4 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Trav6-4A0A075B6B4 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-4A0A075B6B4 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-4A0A075B6B4 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Trav6-4A0A075B6B4 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-4A0A075B6B4 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-4A0A075B6B4 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-4A0A075B6B4 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Trav6-4A0A075B6B4 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-4A0A075B6B4 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6-4A0A075B6B4 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
Trav6-4A0A075B6B4 Gm14121-201ENSMUST00000121441 1380 ntBASIC17.69■□□□□ 0.42
Trav6-4A0A075B6B4 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
Trav6-4A0A075B6B4 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6-4A0A075B6B4 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6-4A0A075B6B4 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6-4A0A075B6B4 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6-4A0A075B6B4 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Trav6-4A0A075B6B4 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
Trav6-4A0A075B6B4 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6-4A0A075B6B4 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6-4A0A075B6B4 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC17.67■□□□□ 0.42
Trav6-4A0A075B6B4 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6-4A0A075B6B4 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6-4A0A075B6B4 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6-4A0A075B6B4 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6-4A0A075B6B4 Gm4799-201ENSMUST00000095396 657 ntBASIC17.66■□□□□ 0.42
Trav6-4A0A075B6B4 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6-4A0A075B6B4 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6-4A0A075B6B4 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-4A0A075B6B4 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-4A0A075B6B4 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-4A0A075B6B4 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-4A0A075B6B4 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Trav6-4A0A075B6B4 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-4A0A075B6B4 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav6-4A0A075B6B4 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav6-4A0A075B6B4 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms