Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHANK3Q9BYB0 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.72□□□□□ -1.81
SHANK3Q9BYB0 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.81
SHANK3Q9BYB0 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 AL450338.1-201ENST00000407987 512 ntBASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 IPMKP1-201ENST00000425988 855 ntBASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 HMGB3P6-201ENST00000444896 598 ntBASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 SEPT7P6-201ENST00000469999 1143 ntBASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 AC117522.3-201ENST00000507974 584 ntBASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 SEC11B-201ENST00000518383 499 ntBASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 AC131238.1-201ENST00000617135 328 ntBASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 SYT14P1-202ENST00000600441 1448 ntBASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC3.71□□□□□ -1.82
SHANK3Q9BYB0 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 Y_RNA.508-201ENST00000384502 114 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 MIR512-1-201ENST00000384913 84 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AL138878.1-201ENST00000405131 347 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 RANP7-201ENST00000418085 644 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AC126121.1-201ENST00000482313 553 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AC111000.2-201ENST00000507775 550 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AP002770.2-201ENST00000543613 532 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AC087468.1-201ENST00000604365 630 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AL356490.1-201ENST00000623079 479 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 MIR1287-201ENST00000408492 90 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AC009963.1-201ENST00000417265 157 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 HMGN2P3-201ENST00000433603 273 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 HMGN2P5-201ENST00000436882 273 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AP001025.2-201ENST00000490908 477 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AC021146.1-201ENST00000511202 716 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 FABP5P12-201ENST00000515543 389 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 MIR2114-201ENST00000516645 80 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 AC015911.5-201ENST00000587076 451 ntBASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SHANK3Q9BYB0 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 AL360182.1-201ENST00000397433 468 ntBASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 AL356057.3-201ENST00000402607 340 ntBASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 SETP10-201ENST00000424368 814 ntBASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 AC103710.3-201ENST00000608157 948 ntBASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 AL356274.1-201ENST00000617064 410 ntBASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC3.69□□□□□ -1.82
SHANK3Q9BYB0 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 RNA5SP289-201ENST00000362332 137 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 SNORD56.3-201ENST00000363507 71 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 RPS3AP26-201ENST00000398259 784 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 AMD1P2-201ENST00000412936 992 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 RPL30P2-201ENST00000414021 291 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 AC010468.1-201ENST00000461022 817 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 AC003982.1-202ENST00000469928 248 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 AC135999.1-201ENST00000478962 479 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 AC106872.2-201ENST00000494303 480 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 KLHL2P1-201ENST00000508691 521 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 SCGB1D5P-201ENST00000515134 247 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 RN7SKP283-201ENST00000517197 270 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 AF186190.1-201ENST00000517470 480 ntBASIC3.68□□□□□ -1.82
SHANK3Q9BYB0 AC007424.1-203ENST00000554613 687 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 249.7 ms