Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
COMMD3-BMI1R4GMX3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
COMMD3-BMI1R4GMX3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
COMMD3-BMI1R4GMX3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
COMMD3-BMI1R4GMX3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COMMD3-BMI1R4GMX3 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC23.91■■□□□ 1.42
COMMD3-BMI1R4GMX3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC23.91■■□□□ 1.42
COMMD3-BMI1R4GMX3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC23.91■■□□□ 1.42
COMMD3-BMI1R4GMX3 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COMMD3-BMI1R4GMX3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COMMD3-BMI1R4GMX3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.9■■□□□ 1.42
COMMD3-BMI1R4GMX3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.9■■□□□ 1.42
COMMD3-BMI1R4GMX3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
COMMD3-BMI1R4GMX3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
COMMD3-BMI1R4GMX3 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
COMMD3-BMI1R4GMX3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.89■■□□□ 1.41
COMMD3-BMI1R4GMX3 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COMMD3-BMI1R4GMX3 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COMMD3-BMI1R4GMX3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
COMMD3-BMI1R4GMX3 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
COMMD3-BMI1R4GMX3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COMMD3-BMI1R4GMX3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
COMMD3-BMI1R4GMX3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COMMD3-BMI1R4GMX3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COMMD3-BMI1R4GMX3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
COMMD3-BMI1R4GMX3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COMMD3-BMI1R4GMX3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
COMMD3-BMI1R4GMX3 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
COMMD3-BMI1R4GMX3 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.85■■□□□ 1.41
COMMD3-BMI1R4GMX3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC23.84■■□□□ 1.41
COMMD3-BMI1R4GMX3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC23.84■■□□□ 1.41
COMMD3-BMI1R4GMX3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COMMD3-BMI1R4GMX3 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
COMMD3-BMI1R4GMX3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.83■■□□□ 1.4
COMMD3-BMI1R4GMX3 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC23.82■■□□□ 1.4
COMMD3-BMI1R4GMX3 AL139393.2-201ENST00000608721 2025 ntBASIC23.81■■□□□ 1.4
COMMD3-BMI1R4GMX3 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
COMMD3-BMI1R4GMX3 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.81■■□□□ 1.4
COMMD3-BMI1R4GMX3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COMMD3-BMI1R4GMX3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COMMD3-BMI1R4GMX3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COMMD3-BMI1R4GMX3 AC020928.2-201ENST00000588717 2197 ntBASIC23.8■■□□□ 1.4
COMMD3-BMI1R4GMX3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.79■■□□□ 1.4
COMMD3-BMI1R4GMX3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COMMD3-BMI1R4GMX3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COMMD3-BMI1R4GMX3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COMMD3-BMI1R4GMX3 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
COMMD3-BMI1R4GMX3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COMMD3-BMI1R4GMX3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COMMD3-BMI1R4GMX3 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.77■■□□□ 1.4
COMMD3-BMI1R4GMX3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COMMD3-BMI1R4GMX3 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COMMD3-BMI1R4GMX3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COMMD3-BMI1R4GMX3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
COMMD3-BMI1R4GMX3 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
COMMD3-BMI1R4GMX3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COMMD3-BMI1R4GMX3 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COMMD3-BMI1R4GMX3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
COMMD3-BMI1R4GMX3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.76■■□□□ 1.39
COMMD3-BMI1R4GMX3 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
COMMD3-BMI1R4GMX3 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
COMMD3-BMI1R4GMX3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COMMD3-BMI1R4GMX3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COMMD3-BMI1R4GMX3 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COMMD3-BMI1R4GMX3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.75■■□□□ 1.39
COMMD3-BMI1R4GMX3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COMMD3-BMI1R4GMX3 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
COMMD3-BMI1R4GMX3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COMMD3-BMI1R4GMX3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COMMD3-BMI1R4GMX3 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COMMD3-BMI1R4GMX3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
COMMD3-BMI1R4GMX3 BX255925.1-201ENST00000566954 1854 ntBASIC23.74■■□□□ 1.39
COMMD3-BMI1R4GMX3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COMMD3-BMI1R4GMX3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COMMD3-BMI1R4GMX3 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COMMD3-BMI1R4GMX3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
COMMD3-BMI1R4GMX3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COMMD3-BMI1R4GMX3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COMMD3-BMI1R4GMX3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC23.72■■□□□ 1.39
COMMD3-BMI1R4GMX3 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.72■■□□□ 1.39
COMMD3-BMI1R4GMX3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
COMMD3-BMI1R4GMX3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
COMMD3-BMI1R4GMX3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COMMD3-BMI1R4GMX3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COMMD3-BMI1R4GMX3 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
COMMD3-BMI1R4GMX3 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.7■■□□□ 1.38
COMMD3-BMI1R4GMX3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
COMMD3-BMI1R4GMX3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC23.7■■□□□ 1.38
COMMD3-BMI1R4GMX3 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COMMD3-BMI1R4GMX3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COMMD3-BMI1R4GMX3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
COMMD3-BMI1R4GMX3 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
COMMD3-BMI1R4GMX3 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC23.69■■□□□ 1.38
COMMD3-BMI1R4GMX3 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COMMD3-BMI1R4GMX3 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
COMMD3-BMI1R4GMX3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.68■■□□□ 1.38
COMMD3-BMI1R4GMX3 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COMMD3-BMI1R4GMX3 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COMMD3-BMI1R4GMX3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.68■■□□□ 1.38
COMMD3-BMI1R4GMX3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms