Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28.78■■■□□ 2.2
COL4A3BPQ9Y5P4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC28.77■■■□□ 2.2
COL4A3BPQ9Y5P4 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC28.76■■■□□ 2.19
COL4A3BPQ9Y5P4 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
COL4A3BPQ9Y5P4 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
COL4A3BPQ9Y5P4 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC28.73■■■□□ 2.19
COL4A3BPQ9Y5P4 LINC00273-201ENST00000539813 1452 ntBASIC28.73■■■□□ 2.19
COL4A3BPQ9Y5P4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC28.73■■■□□ 2.19
COL4A3BPQ9Y5P4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC28.73■■■□□ 2.19
COL4A3BPQ9Y5P4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.73■■■□□ 2.19
COL4A3BPQ9Y5P4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
COL4A3BPQ9Y5P4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC28.72■■■□□ 2.19
COL4A3BPQ9Y5P4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.72■■■□□ 2.19
COL4A3BPQ9Y5P4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC28.71■■■□□ 2.19
COL4A3BPQ9Y5P4 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
COL4A3BPQ9Y5P4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC28.7■■■□□ 2.19
COL4A3BPQ9Y5P4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
COL4A3BPQ9Y5P4 MIR3648-2-201ENST00000581792 180 ntBASIC28.7■■■□□ 2.18
COL4A3BPQ9Y5P4 MIR3648-1-201ENST00000615959 180 ntBASIC28.7■■■□□ 2.18
COL4A3BPQ9Y5P4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
COL4A3BPQ9Y5P4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC28.69■■■□□ 2.18
COL4A3BPQ9Y5P4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC28.69■■■□□ 2.18
COL4A3BPQ9Y5P4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC28.69■■■□□ 2.18
COL4A3BPQ9Y5P4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC28.69■■■□□ 2.18
COL4A3BPQ9Y5P4 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
COL4A3BPQ9Y5P4 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
COL4A3BPQ9Y5P4 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
COL4A3BPQ9Y5P4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC28.68■■■□□ 2.18
COL4A3BPQ9Y5P4 CR559946.2-201ENST00000623684 991 ntBASIC28.68■■■□□ 2.18
COL4A3BPQ9Y5P4 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC28.68■■■□□ 2.18
COL4A3BPQ9Y5P4 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
COL4A3BPQ9Y5P4 AP004833.2-201ENST00000532228 1454 ntBASIC28.66■■■□□ 2.18
COL4A3BPQ9Y5P4 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
COL4A3BPQ9Y5P4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.66■■■□□ 2.18
COL4A3BPQ9Y5P4 AC016575.1-201ENST00000607026 382 ntBASIC28.66■■■□□ 2.18
COL4A3BPQ9Y5P4 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
COL4A3BPQ9Y5P4 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
COL4A3BPQ9Y5P4 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
COL4A3BPQ9Y5P4 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC28.66■■■□□ 2.18
COL4A3BPQ9Y5P4 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
COL4A3BPQ9Y5P4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC28.65■■■□□ 2.18
COL4A3BPQ9Y5P4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC28.65■■■□□ 2.18
COL4A3BPQ9Y5P4 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC28.65■■■□□ 2.18
COL4A3BPQ9Y5P4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
COL4A3BPQ9Y5P4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC28.65■■■□□ 2.18
COL4A3BPQ9Y5P4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC28.65■■■□□ 2.18
COL4A3BPQ9Y5P4 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
COL4A3BPQ9Y5P4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL4A3BPQ9Y5P4 DUX4L13-201ENST00000554103 1267 ntBASIC28.64■■■□□ 2.18
COL4A3BPQ9Y5P4 DUX4L15-201ENST00000611059 1267 ntBASIC28.64■■■□□ 2.18
COL4A3BPQ9Y5P4 DUX4L23-201ENST00000615195 1269 ntBASIC28.64■■■□□ 2.18
COL4A3BPQ9Y5P4 DUX4L24-201ENST00000617576 1269 ntBASIC28.64■■■□□ 2.18
COL4A3BPQ9Y5P4 DUX4L22-201ENST00000618238 1269 ntBASIC28.64■■■□□ 2.18
COL4A3BPQ9Y5P4 DUX4L20-201ENST00000619712 1269 ntBASIC28.64■■■□□ 2.18
COL4A3BPQ9Y5P4 DUX4L21-201ENST00000622058 1269 ntBASIC28.64■■■□□ 2.18
COL4A3BPQ9Y5P4 DUX4L10-201ENST00000622460 1267 ntBASIC28.64■■■□□ 2.18
COL4A3BPQ9Y5P4 DUX4L25-201ENST00000624915 1269 ntBASIC28.64■■■□□ 2.18
COL4A3BPQ9Y5P4 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.64■■■□□ 2.17
COL4A3BPQ9Y5P4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
COL4A3BPQ9Y5P4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL4A3BPQ9Y5P4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC28.63■■■□□ 2.17
COL4A3BPQ9Y5P4 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL4A3BPQ9Y5P4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL4A3BPQ9Y5P4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL4A3BPQ9Y5P4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL4A3BPQ9Y5P4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
COL4A3BPQ9Y5P4 MIR639-201ENST00000384974 98 ntBASIC28.61■■■□□ 2.17
COL4A3BPQ9Y5P4 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL4A3BPQ9Y5P4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL4A3BPQ9Y5P4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL4A3BPQ9Y5P4 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.6■■■□□ 2.17
COL4A3BPQ9Y5P4 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL4A3BPQ9Y5P4 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.58■■■□□ 2.17
COL4A3BPQ9Y5P4 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
COL4A3BPQ9Y5P4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.57■■■□□ 2.16
COL4A3BPQ9Y5P4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC28.57■■■□□ 2.16
COL4A3BPQ9Y5P4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL4A3BPQ9Y5P4 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC28.57■■■□□ 2.16
COL4A3BPQ9Y5P4 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL4A3BPQ9Y5P4 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL4A3BPQ9Y5P4 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL4A3BPQ9Y5P4 AC135983.2-203ENST00000454486 1613 ntBASIC28.54■■■□□ 2.16
COL4A3BPQ9Y5P4 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL4A3BPQ9Y5P4 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
COL4A3BPQ9Y5P4 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
COL4A3BPQ9Y5P4 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC28.52■■■□□ 2.16
COL4A3BPQ9Y5P4 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC28.52■■■□□ 2.16
COL4A3BPQ9Y5P4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
COL4A3BPQ9Y5P4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.16
COL4A3BPQ9Y5P4 WHAMMP2-203ENST00000563942 1603 ntBASIC28.51■■■□□ 2.15
COL4A3BPQ9Y5P4 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.51■■■□□ 2.15
COL4A3BPQ9Y5P4 MIR4449-201ENST00000578365 66 ntBASIC28.51■■■□□ 2.15
COL4A3BPQ9Y5P4 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC28.5■■■□□ 2.15
COL4A3BPQ9Y5P4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC28.5■■■□□ 2.15
COL4A3BPQ9Y5P4 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC28.5■■■□□ 2.15
COL4A3BPQ9Y5P4 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
COL4A3BPQ9Y5P4 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
COL4A3BPQ9Y5P4 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC28.49■■■□□ 2.15
COL4A3BPQ9Y5P4 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
COL4A3BPQ9Y5P4 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms