Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
SHANK1Q9Y566 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
SHANK1Q9Y566 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.45■■□□□ 1.34
SHANK1Q9Y566 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
SHANK1Q9Y566 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.44■■□□□ 1.34
SHANK1Q9Y566 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.44■■□□□ 1.34
SHANK1Q9Y566 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
SHANK1Q9Y566 AC008813.1-201ENST00000536597 885 ntBASIC23.43■■□□□ 1.34
SHANK1Q9Y566 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SHANK1Q9Y566 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
SHANK1Q9Y566 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
SHANK1Q9Y566 AL033527.3-201ENST00000566366 1196 ntBASIC23.41■■□□□ 1.34
SHANK1Q9Y566 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.41■■□□□ 1.34
SHANK1Q9Y566 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC23.41■■□□□ 1.34
SHANK1Q9Y566 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SHANK1Q9Y566 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
SHANK1Q9Y566 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
SHANK1Q9Y566 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
SHANK1Q9Y566 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
SHANK1Q9Y566 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
SHANK1Q9Y566 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
SHANK1Q9Y566 AC018358.1-201ENST00000631079 1402 ntBASIC23.39■■□□□ 1.34
SHANK1Q9Y566 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
SHANK1Q9Y566 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.39■■□□□ 1.33
SHANK1Q9Y566 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.39■■□□□ 1.33
SHANK1Q9Y566 AC060814.1-201ENST00000554326 538 ntBASIC23.38■■□□□ 1.33
SHANK1Q9Y566 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.38■■□□□ 1.33
SHANK1Q9Y566 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.38■■□□□ 1.33
SHANK1Q9Y566 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK1Q9Y566 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
SHANK1Q9Y566 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK1Q9Y566 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK1Q9Y566 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK1Q9Y566 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK1Q9Y566 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.37■■□□□ 1.33
SHANK1Q9Y566 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SHANK1Q9Y566 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SHANK1Q9Y566 AC148477.6-201ENST00000623746 465 ntBASIC23.36■■□□□ 1.33
SHANK1Q9Y566 KRT18P60-201ENST00000312876 1297 ntBASIC23.35■■□□□ 1.33
SHANK1Q9Y566 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.35■■□□□ 1.33
SHANK1Q9Y566 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
SHANK1Q9Y566 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SHANK1Q9Y566 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SHANK1Q9Y566 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.35■■□□□ 1.33
SHANK1Q9Y566 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.35■■□□□ 1.33
SHANK1Q9Y566 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SHANK1Q9Y566 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SHANK1Q9Y566 AC010864.1-201ENST00000609407 1511 ntBASIC23.34■■□□□ 1.33
SHANK1Q9Y566 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.34■■□□□ 1.33
SHANK1Q9Y566 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SHANK1Q9Y566 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SHANK1Q9Y566 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.32
SHANK1Q9Y566 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
SHANK1Q9Y566 AL161658.1-201ENST00000623641 1967 ntBASIC23.32■■□□□ 1.32
SHANK1Q9Y566 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SHANK1Q9Y566 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SHANK1Q9Y566 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.32■■□□□ 1.32
SHANK1Q9Y566 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.32■■□□□ 1.32
SHANK1Q9Y566 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHANK1Q9Y566 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHANK1Q9Y566 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHANK1Q9Y566 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
SHANK1Q9Y566 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SHANK1Q9Y566 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SHANK1Q9Y566 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.29■■□□□ 1.32
SHANK1Q9Y566 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SHANK1Q9Y566 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SHANK1Q9Y566 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHANK1Q9Y566 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHANK1Q9Y566 U85056.1-201ENST00000616429 682 ntBASIC23.28■■□□□ 1.32
SHANK1Q9Y566 AC135983.2-203ENST00000454486 1613 ntBASIC23.28■■□□□ 1.32
SHANK1Q9Y566 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
SHANK1Q9Y566 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SHANK1Q9Y566 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SHANK1Q9Y566 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC23.27■■□□□ 1.32
SHANK1Q9Y566 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SHANK1Q9Y566 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.27■■□□□ 1.32
SHANK1Q9Y566 WHAMMP2-203ENST00000563942 1603 ntBASIC23.26■■□□□ 1.31
SHANK1Q9Y566 TSPY13P-201ENST00000338964 914 ntBASIC23.26■■□□□ 1.31
SHANK1Q9Y566 AC092296.2-201ENST00000589470 999 ntBASIC23.26■■□□□ 1.31
SHANK1Q9Y566 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SHANK1Q9Y566 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SHANK1Q9Y566 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SHANK1Q9Y566 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SHANK1Q9Y566 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
SHANK1Q9Y566 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHANK1Q9Y566 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHANK1Q9Y566 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHANK1Q9Y566 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHANK1Q9Y566 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.24■■□□□ 1.31
SHANK1Q9Y566 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SHANK1Q9Y566 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC23.23■■□□□ 1.31
SHANK1Q9Y566 RARRES2P1-201ENST00000474487 481 ntBASIC23.23■■□□□ 1.31
SHANK1Q9Y566 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
SHANK1Q9Y566 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.23■■□□□ 1.31
SHANK1Q9Y566 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23.23■■□□□ 1.31
SHANK1Q9Y566 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
SHANK1Q9Y566 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK1Q9Y566 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK1Q9Y566 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC23.22■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms