Protein–RNA interactions for Protein: Q9HBM1

SPC25, Kinetochore protein Spc25, humanhuman

Predictions only

Length 224 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPC25Q9HBM1 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SPC25Q9HBM1 AC127502.1-201ENST00000399971 1502 ntBASIC29.02■■■□□ 2.24
SPC25Q9HBM1 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.01■■■□□ 2.23
SPC25Q9HBM1 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.01■■■□□ 2.23
SPC25Q9HBM1 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC29■■■□□ 2.23
SPC25Q9HBM1 NTF6A-201ENST00000591175 560 ntBASIC29■■■□□ 2.23
SPC25Q9HBM1 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC29■■■□□ 2.23
SPC25Q9HBM1 AC135983.2-203ENST00000454486 1613 ntBASIC28.99■■■□□ 2.23
SPC25Q9HBM1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
SPC25Q9HBM1 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
SPC25Q9HBM1 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC28.98■■■□□ 2.23
SPC25Q9HBM1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC28.97■■■□□ 2.23
SPC25Q9HBM1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC28.97■■■□□ 2.23
SPC25Q9HBM1 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
SPC25Q9HBM1 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC28.97■■■□□ 2.23
SPC25Q9HBM1 WHAMMP2-203ENST00000563942 1603 ntBASIC28.97■■■□□ 2.23
SPC25Q9HBM1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC28.96■■■□□ 2.23
SPC25Q9HBM1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC28.96■■■□□ 2.23
SPC25Q9HBM1 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC28.95■■■□□ 2.23
SPC25Q9HBM1 CHST11-203ENST00000547956 936 ntTSL 2 BASIC28.95■■■□□ 2.22
SPC25Q9HBM1 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.95■■■□□ 2.22
SPC25Q9HBM1 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC28.94■■■□□ 2.22
SPC25Q9HBM1 AC012354.3-201ENST00000623734 483 ntBASIC28.94■■■□□ 2.22
SPC25Q9HBM1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.93■■■□□ 2.22
SPC25Q9HBM1 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SPC25Q9HBM1 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SPC25Q9HBM1 AC110285.7-201ENST00000624417 1536 ntBASIC28.9■■■□□ 2.22
SPC25Q9HBM1 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC28.9■■■□□ 2.22
SPC25Q9HBM1 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SPC25Q9HBM1 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC28.9■■■□□ 2.22
SPC25Q9HBM1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SPC25Q9HBM1 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC28.89■■■□□ 2.22
SPC25Q9HBM1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.89■■■□□ 2.22
SPC25Q9HBM1 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SPC25Q9HBM1 AC148477.6-201ENST00000623746 465 ntBASIC28.87■■■□□ 2.21
SPC25Q9HBM1 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.87■■■□□ 2.21
SPC25Q9HBM1 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
SPC25Q9HBM1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC28.86■■■□□ 2.21
SPC25Q9HBM1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SPC25Q9HBM1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
SPC25Q9HBM1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.85■■■□□ 2.21
SPC25Q9HBM1 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SPC25Q9HBM1 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
SPC25Q9HBM1 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
SPC25Q9HBM1 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
SPC25Q9HBM1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
SPC25Q9HBM1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC28.82■■■□□ 2.2
SPC25Q9HBM1 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC28.82■■■□□ 2.2
SPC25Q9HBM1 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
SPC25Q9HBM1 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC28.81■■■□□ 2.2
SPC25Q9HBM1 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC28.81■■■□□ 2.2
SPC25Q9HBM1 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
SPC25Q9HBM1 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
SPC25Q9HBM1 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
SPC25Q9HBM1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC28.8■■■□□ 2.2
SPC25Q9HBM1 AC060814.1-201ENST00000554326 538 ntBASIC28.8■■■□□ 2.2
SPC25Q9HBM1 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SPC25Q9HBM1 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SPC25Q9HBM1 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SPC25Q9HBM1 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC28.79■■■□□ 2.2
SPC25Q9HBM1 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC28.78■■■□□ 2.2
SPC25Q9HBM1 AL135925.1-201ENST00000605920 1701 ntBASIC28.78■■■□□ 2.2
SPC25Q9HBM1 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SPC25Q9HBM1 RPS2-210ENST00000530225 765 ntTSL 2 BASIC28.78■■■□□ 2.2
SPC25Q9HBM1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC28.78■■■□□ 2.2
SPC25Q9HBM1 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
SPC25Q9HBM1 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
SPC25Q9HBM1 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.76■■■□□ 2.19
SPC25Q9HBM1 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SPC25Q9HBM1 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC28.76■■■□□ 2.19
SPC25Q9HBM1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC28.75■■■□□ 2.19
SPC25Q9HBM1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SPC25Q9HBM1 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC28.75■■■□□ 2.19
SPC25Q9HBM1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
SPC25Q9HBM1 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SPC25Q9HBM1 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SPC25Q9HBM1 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
SPC25Q9HBM1 MIR219A2-201ENST00000608502 1504 ntBASIC28.74■■■□□ 2.19
SPC25Q9HBM1 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC28.73■■■□□ 2.19
SPC25Q9HBM1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC28.73■■■□□ 2.19
SPC25Q9HBM1 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SPC25Q9HBM1 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC28.72■■■□□ 2.19
SPC25Q9HBM1 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SPC25Q9HBM1 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SPC25Q9HBM1 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
SPC25Q9HBM1 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
SPC25Q9HBM1 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC28.7■■■□□ 2.18
SPC25Q9HBM1 AL033527.3-201ENST00000566366 1196 ntBASIC28.7■■■□□ 2.18
SPC25Q9HBM1 U85056.1-201ENST00000616429 682 ntBASIC28.7■■■□□ 2.18
SPC25Q9HBM1 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SPC25Q9HBM1 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SPC25Q9HBM1 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
SPC25Q9HBM1 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
SPC25Q9HBM1 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SPC25Q9HBM1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
SPC25Q9HBM1 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
SPC25Q9HBM1 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
SPC25Q9HBM1 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SPC25Q9HBM1 AC126177.7-201ENST00000547904 679 ntBASIC28.67■■■□□ 2.18
SPC25Q9HBM1 AC018358.1-201ENST00000631079 1402 ntBASIC28.67■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms