Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.8■■■□□ 2.68
RTFDC1Q9BY42 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC31.8■■■□□ 2.68
RTFDC1Q9BY42 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.79■■■□□ 2.68
RTFDC1Q9BY42 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
RTFDC1Q9BY42 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC31.78■■■□□ 2.68
RTFDC1Q9BY42 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
RTFDC1Q9BY42 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
RTFDC1Q9BY42 WHAMMP2-203ENST00000563942 1603 ntBASIC31.77■■■□□ 2.68
RTFDC1Q9BY42 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
RTFDC1Q9BY42 AC127502.1-201ENST00000399971 1502 ntBASIC31.76■■■□□ 2.68
RTFDC1Q9BY42 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.67
RTFDC1Q9BY42 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.67
RTFDC1Q9BY42 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.76■■■□□ 2.67
RTFDC1Q9BY42 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC31.76■■■□□ 2.67
RTFDC1Q9BY42 AC012354.3-201ENST00000623734 483 ntBASIC31.76■■■□□ 2.67
RTFDC1Q9BY42 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
RTFDC1Q9BY42 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
RTFDC1Q9BY42 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
RTFDC1Q9BY42 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31.75■■■□□ 2.67
RTFDC1Q9BY42 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.74■■■□□ 2.67
RTFDC1Q9BY42 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
RTFDC1Q9BY42 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
RTFDC1Q9BY42 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
RTFDC1Q9BY42 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
RTFDC1Q9BY42 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
RTFDC1Q9BY42 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
RTFDC1Q9BY42 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.7■■■□□ 2.66
RTFDC1Q9BY42 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
RTFDC1Q9BY42 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.69■■■□□ 2.66
RTFDC1Q9BY42 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.69■■■□□ 2.66
RTFDC1Q9BY42 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
RTFDC1Q9BY42 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC31.69■■■□□ 2.66
RTFDC1Q9BY42 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
RTFDC1Q9BY42 AC148477.6-201ENST00000623746 465 ntBASIC31.67■■■□□ 2.66
RTFDC1Q9BY42 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
RTFDC1Q9BY42 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
RTFDC1Q9BY42 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
RTFDC1Q9BY42 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
RTFDC1Q9BY42 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC31.65■■■□□ 2.66
RTFDC1Q9BY42 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
RTFDC1Q9BY42 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
RTFDC1Q9BY42 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC31.65■■■□□ 2.66
RTFDC1Q9BY42 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
RTFDC1Q9BY42 AC060814.1-201ENST00000554326 538 ntBASIC31.64■■■□□ 2.66
RTFDC1Q9BY42 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.64■■■□□ 2.66
RTFDC1Q9BY42 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
RTFDC1Q9BY42 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.62■■■□□ 2.65
RTFDC1Q9BY42 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
RTFDC1Q9BY42 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
RTFDC1Q9BY42 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
RTFDC1Q9BY42 AC110285.7-201ENST00000624417 1536 ntBASIC31.61■■■□□ 2.65
RTFDC1Q9BY42 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
RTFDC1Q9BY42 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTFDC1Q9BY42 U85056.1-201ENST00000616429 682 ntBASIC31.59■■■□□ 2.65
RTFDC1Q9BY42 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTFDC1Q9BY42 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
RTFDC1Q9BY42 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
RTFDC1Q9BY42 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
RTFDC1Q9BY42 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC31.57■■■□□ 2.64
RTFDC1Q9BY42 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
RTFDC1Q9BY42 AC018358.1-201ENST00000631079 1402 ntBASIC31.57■■■□□ 2.64
RTFDC1Q9BY42 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC31.56■■■□□ 2.64
RTFDC1Q9BY42 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC31.56■■■□□ 2.64
RTFDC1Q9BY42 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.56■■■□□ 2.64
RTFDC1Q9BY42 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
RTFDC1Q9BY42 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
RTFDC1Q9BY42 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
RTFDC1Q9BY42 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
RTFDC1Q9BY42 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
RTFDC1Q9BY42 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
RTFDC1Q9BY42 HYI-213ENST00000583037 1322 ntTSL 5 BASIC31.53■■■□□ 2.64
RTFDC1Q9BY42 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
RTFDC1Q9BY42 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC31.53■■■□□ 2.64
RTFDC1Q9BY42 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
RTFDC1Q9BY42 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.53■■■□□ 2.64
RTFDC1Q9BY42 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
RTFDC1Q9BY42 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
RTFDC1Q9BY42 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.53■■■□□ 2.64
RTFDC1Q9BY42 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC31.52■■■□□ 2.64
RTFDC1Q9BY42 AL033527.3-201ENST00000566366 1196 ntBASIC31.52■■■□□ 2.64
RTFDC1Q9BY42 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.51■■■□□ 2.63
RTFDC1Q9BY42 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.51■■■□□ 2.63
RTFDC1Q9BY42 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
RTFDC1Q9BY42 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
RTFDC1Q9BY42 AC092296.2-201ENST00000589470 999 ntBASIC31.5■■■□□ 2.63
RTFDC1Q9BY42 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
RTFDC1Q9BY42 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
RTFDC1Q9BY42 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
RTFDC1Q9BY42 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
RTFDC1Q9BY42 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
RTFDC1Q9BY42 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
RTFDC1Q9BY42 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
RTFDC1Q9BY42 PEX7-203ENST00000541292 945 ntTSL 5 BASIC31.49■■■□□ 2.63
RTFDC1Q9BY42 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
RTFDC1Q9BY42 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
RTFDC1Q9BY42 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.48■■■□□ 2.63
RTFDC1Q9BY42 MIR219A2-201ENST00000608502 1504 ntBASIC31.48■■■□□ 2.63
RTFDC1Q9BY42 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.48■■■□□ 2.63
RTFDC1Q9BY42 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
RTFDC1Q9BY42 AL135925.1-201ENST00000605920 1701 ntBASIC31.47■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms