Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC23.05■■□□□ 1.28
COL12A1Q99715 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL12A1Q99715 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.04■■□□□ 1.28
COL12A1Q99715 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.02■■□□□ 1.28
COL12A1Q99715 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.02■■□□□ 1.28
COL12A1Q99715 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL12A1Q99715 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
COL12A1Q99715 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL12A1Q99715 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL12A1Q99715 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC23.01■■□□□ 1.27
COL12A1Q99715 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.01■■□□□ 1.27
COL12A1Q99715 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL12A1Q99715 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL12A1Q99715 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL12A1Q99715 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23■■□□□ 1.27
COL12A1Q99715 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23■■□□□ 1.27
COL12A1Q99715 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23■■□□□ 1.27
COL12A1Q99715 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL12A1Q99715 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC22.98■■□□□ 1.27
COL12A1Q99715 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.97■■□□□ 1.27
COL12A1Q99715 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL12A1Q99715 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL12A1Q99715 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL12A1Q99715 HES6-204ENST00000409182 863 ntTSL 2 BASIC22.97■■□□□ 1.27
COL12A1Q99715 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL12A1Q99715 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.97■■□□□ 1.27
COL12A1Q99715 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL12A1Q99715 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
COL12A1Q99715 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
COL12A1Q99715 AC009299.2-201ENST00000482477 511 ntBASIC22.93■■□□□ 1.26
COL12A1Q99715 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL12A1Q99715 LINC00273-201ENST00000539813 1452 ntBASIC22.93■■□□□ 1.26
COL12A1Q99715 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC22.93■■□□□ 1.26
COL12A1Q99715 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
COL12A1Q99715 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.93■■□□□ 1.26
COL12A1Q99715 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
COL12A1Q99715 AC025884.2-201ENST00000553429 711 ntBASIC22.92■■□□□ 1.26
COL12A1Q99715 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
COL12A1Q99715 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.92■■□□□ 1.26
COL12A1Q99715 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL12A1Q99715 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL12A1Q99715 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL12A1Q99715 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL12A1Q99715 AC129492.7-201ENST00000622992 756 ntBASIC22.9■■□□□ 1.26
COL12A1Q99715 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL12A1Q99715 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL12A1Q99715 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.9■■□□□ 1.26
COL12A1Q99715 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.9■■□□□ 1.26
COL12A1Q99715 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC22.89■■□□□ 1.26
COL12A1Q99715 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC22.89■■□□□ 1.26
COL12A1Q99715 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.26
COL12A1Q99715 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL12A1Q99715 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC22.89■■□□□ 1.25
COL12A1Q99715 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL12A1Q99715 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC22.88■■□□□ 1.25
COL12A1Q99715 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL12A1Q99715 GUSBP5-201ENST00000418136 578 ntBASIC22.88■■□□□ 1.25
COL12A1Q99715 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
COL12A1Q99715 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL12A1Q99715 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
COL12A1Q99715 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
COL12A1Q99715 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
COL12A1Q99715 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
COL12A1Q99715 DUX4L18-201ENST00000553347 1267 ntBASIC22.87■■□□□ 1.25
COL12A1Q99715 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.86■■□□□ 1.25
COL12A1Q99715 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.86■■□□□ 1.25
COL12A1Q99715 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL12A1Q99715 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL12A1Q99715 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL12A1Q99715 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
COL12A1Q99715 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL12A1Q99715 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.85■■□□□ 1.25
COL12A1Q99715 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL12A1Q99715 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL12A1Q99715 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL12A1Q99715 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
COL12A1Q99715 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL12A1Q99715 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL12A1Q99715 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC22.83■■□□□ 1.24
COL12A1Q99715 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
COL12A1Q99715 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC22.82■■□□□ 1.24
COL12A1Q99715 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
COL12A1Q99715 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
COL12A1Q99715 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
COL12A1Q99715 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
COL12A1Q99715 KRT8P33-201ENST00000508125 1423 ntBASIC22.8■■□□□ 1.24
COL12A1Q99715 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC22.8■■□□□ 1.24
COL12A1Q99715 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.8■■□□□ 1.24
COL12A1Q99715 CHST11-203ENST00000547956 936 ntTSL 2 BASIC22.8■■□□□ 1.24
COL12A1Q99715 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.8■■□□□ 1.24
COL12A1Q99715 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
COL12A1Q99715 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
COL12A1Q99715 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
COL12A1Q99715 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.78■■□□□ 1.24
COL12A1Q99715 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
COL12A1Q99715 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
COL12A1Q99715 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
COL12A1Q99715 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
COL12A1Q99715 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
COL12A1Q99715 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.77■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms