Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PTCD3Q96EY7 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PTCD3Q96EY7 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PTCD3Q96EY7 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
PTCD3Q96EY7 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PTCD3Q96EY7 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.35■■□□□ 1.65
PTCD3Q96EY7 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
PTCD3Q96EY7 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
PTCD3Q96EY7 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.34■■□□□ 1.65
PTCD3Q96EY7 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PTCD3Q96EY7 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.33■■□□□ 1.65
PTCD3Q96EY7 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PTCD3Q96EY7 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
PTCD3Q96EY7 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.32■■□□□ 1.64
PTCD3Q96EY7 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PTCD3Q96EY7 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
PTCD3Q96EY7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC25.32■■□□□ 1.64
PTCD3Q96EY7 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PTCD3Q96EY7 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
PTCD3Q96EY7 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PTCD3Q96EY7 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.31■■□□□ 1.64
PTCD3Q96EY7 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD3Q96EY7 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD3Q96EY7 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD3Q96EY7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
PTCD3Q96EY7 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD3Q96EY7 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.29■■□□□ 1.64
PTCD3Q96EY7 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
PTCD3Q96EY7 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD3Q96EY7 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD3Q96EY7 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD3Q96EY7 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD3Q96EY7 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PTCD3Q96EY7 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PTCD3Q96EY7 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PTCD3Q96EY7 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PTCD3Q96EY7 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PTCD3Q96EY7 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.27■■□□□ 1.64
PTCD3Q96EY7 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD3Q96EY7 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD3Q96EY7 AC005559.1-201ENST00000589661 871 ntBASIC25.26■■□□□ 1.63
PTCD3Q96EY7 BX255925.1-201ENST00000566954 1854 ntBASIC25.26■■□□□ 1.63
PTCD3Q96EY7 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC25.25■■□□□ 1.63
PTCD3Q96EY7 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD3Q96EY7 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD3Q96EY7 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD3Q96EY7 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC25.24■■□□□ 1.63
PTCD3Q96EY7 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.24■■□□□ 1.63
PTCD3Q96EY7 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD3Q96EY7 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD3Q96EY7 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD3Q96EY7 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD3Q96EY7 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD3Q96EY7 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD3Q96EY7 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC25.22■■□□□ 1.63
PTCD3Q96EY7 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD3Q96EY7 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD3Q96EY7 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD3Q96EY7 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCD3Q96EY7 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PTCD3Q96EY7 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
PTCD3Q96EY7 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC25.21■■□□□ 1.63
PTCD3Q96EY7 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
PTCD3Q96EY7 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.2■■□□□ 1.62
PTCD3Q96EY7 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD3Q96EY7 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC25.2■■□□□ 1.62
PTCD3Q96EY7 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD3Q96EY7 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD3Q96EY7 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.19■■□□□ 1.62
PTCD3Q96EY7 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD3Q96EY7 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD3Q96EY7 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD3Q96EY7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
PTCD3Q96EY7 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC25.18■■□□□ 1.62
PTCD3Q96EY7 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
PTCD3Q96EY7 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD3Q96EY7 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD3Q96EY7 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD3Q96EY7 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD3Q96EY7 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD3Q96EY7 SHF-208ENST00000560734 1731 ntTSL 3 BASIC25.17■■□□□ 1.62
PTCD3Q96EY7 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.16■■□□□ 1.62
PTCD3Q96EY7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.16■■□□□ 1.62
PTCD3Q96EY7 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTCD3Q96EY7 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTCD3Q96EY7 AL449106.1-201ENST00000608517 1980 ntBASIC25.15■■□□□ 1.62
PTCD3Q96EY7 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTCD3Q96EY7 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.15■■□□□ 1.62
PTCD3Q96EY7 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.14■■□□□ 1.62
PTCD3Q96EY7 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD3Q96EY7 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.14■■□□□ 1.62
PTCD3Q96EY7 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD3Q96EY7 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC25.14■■□□□ 1.62
PTCD3Q96EY7 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.14■■□□□ 1.62
PTCD3Q96EY7 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.14■■□□□ 1.62
PTCD3Q96EY7 MIR3665-201ENST00000578708 105 ntBASIC25.14■■□□□ 1.62
PTCD3Q96EY7 AP006261.1-201ENST00000584783 668 ntBASIC25.14■■□□□ 1.62
PTCD3Q96EY7 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC25.14■■□□□ 1.62
PTCD3Q96EY7 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC25.14■■□□□ 1.61
PTCD3Q96EY7 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms