Protein–RNA interactions for Protein: Q921W0

Chmp1a, Charged multivesicular body protein 1a, mousemouse

Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp1aQ921W0 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Chmp1aQ921W0 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Chmp1aQ921W0 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Chmp1aQ921W0 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Chmp1aQ921W0 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Chmp1aQ921W0 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Chmp1aQ921W0 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Chmp1aQ921W0 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Chmp1aQ921W0 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Chmp1aQ921W0 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Chmp1aQ921W0 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Chmp1aQ921W0 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Chmp1aQ921W0 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp1aQ921W0 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.58■□□□□ 0.88
Chmp1aQ921W0 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp1aQ921W0 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp1aQ921W0 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp1aQ921W0 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chmp1aQ921W0 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chmp1aQ921W0 Gm16148-201ENSMUST00000119653 893 ntBASIC20.57■□□□□ 0.88
Chmp1aQ921W0 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chmp1aQ921W0 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp1aQ921W0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp1aQ921W0 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp1aQ921W0 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp1aQ921W0 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp1aQ921W0 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Chmp1aQ921W0 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp1aQ921W0 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp1aQ921W0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp1aQ921W0 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp1aQ921W0 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
Chmp1aQ921W0 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Chmp1aQ921W0 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Chmp1aQ921W0 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Chmp1aQ921W0 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Chmp1aQ921W0 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Chmp1aQ921W0 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp1aQ921W0 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Chmp1aQ921W0 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp1aQ921W0 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp1aQ921W0 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp1aQ921W0 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Chmp1aQ921W0 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Chmp1aQ921W0 Gm24804-201ENSMUST00000174982 85 ntBASIC20.51■□□□□ 0.87
Chmp1aQ921W0 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp1aQ921W0 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp1aQ921W0 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp1aQ921W0 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Chmp1aQ921W0 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Chmp1aQ921W0 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Chmp1aQ921W0 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp1aQ921W0 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Chmp1aQ921W0 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp1aQ921W0 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp1aQ921W0 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp1aQ921W0 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp1aQ921W0 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp1aQ921W0 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Chmp1aQ921W0 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Chmp1aQ921W0 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Chmp1aQ921W0 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Chmp1aQ921W0 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC20.46■□□□□ 0.87
Chmp1aQ921W0 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Chmp1aQ921W0 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.46■□□□□ 0.87
Chmp1aQ921W0 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Chmp1aQ921W0 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Chmp1aQ921W0 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Chmp1aQ921W0 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Chmp1aQ921W0 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp1aQ921W0 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp1aQ921W0 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Chmp1aQ921W0 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Chmp1aQ921W0 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp1aQ921W0 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.44■□□□□ 0.86
Chmp1aQ921W0 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp1aQ921W0 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp1aQ921W0 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp1aQ921W0 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp1aQ921W0 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp1aQ921W0 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp1aQ921W0 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp1aQ921W0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Chmp1aQ921W0 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp1aQ921W0 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp1aQ921W0 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.42■□□□□ 0.86
Chmp1aQ921W0 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp1aQ921W0 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp1aQ921W0 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp1aQ921W0 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp1aQ921W0 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.41■□□□□ 0.86
Chmp1aQ921W0 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp1aQ921W0 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.4■□□□□ 0.86
Chmp1aQ921W0 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Chmp1aQ921W0 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Chmp1aQ921W0 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Chmp1aQ921W0 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Chmp1aQ921W0 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Chmp1aQ921W0 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Chmp1aQ921W0 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms