Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SHROOM3Q8TF72 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHROOM3Q8TF72 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
SHROOM3Q8TF72 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.33■■□□□ 1.81
SHROOM3Q8TF72 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.33■■□□□ 1.81
SHROOM3Q8TF72 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SHROOM3Q8TF72 AC100797.4-201ENST00000631653 1827 ntBASIC26.32■■□□□ 1.8
SHROOM3Q8TF72 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SHROOM3Q8TF72 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.32■■□□□ 1.8
SHROOM3Q8TF72 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.32■■□□□ 1.8
SHROOM3Q8TF72 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHROOM3Q8TF72 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.31■■□□□ 1.8
SHROOM3Q8TF72 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.31■■□□□ 1.8
SHROOM3Q8TF72 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.31■■□□□ 1.8
SHROOM3Q8TF72 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
SHROOM3Q8TF72 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHROOM3Q8TF72 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SHROOM3Q8TF72 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHROOM3Q8TF72 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHROOM3Q8TF72 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
SHROOM3Q8TF72 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.29■■□□□ 1.8
SHROOM3Q8TF72 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.29■■□□□ 1.8
SHROOM3Q8TF72 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.29■■□□□ 1.8
SHROOM3Q8TF72 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
SHROOM3Q8TF72 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.29■■□□□ 1.8
SHROOM3Q8TF72 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.28■■□□□ 1.8
SHROOM3Q8TF72 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SHROOM3Q8TF72 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.27■■□□□ 1.8
SHROOM3Q8TF72 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SHROOM3Q8TF72 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SHROOM3Q8TF72 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SHROOM3Q8TF72 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.26■■□□□ 1.79
SHROOM3Q8TF72 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
SHROOM3Q8TF72 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.26■■□□□ 1.79
SHROOM3Q8TF72 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC26.26■■□□□ 1.79
SHROOM3Q8TF72 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SHROOM3Q8TF72 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SHROOM3Q8TF72 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.25■■□□□ 1.79
SHROOM3Q8TF72 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
SHROOM3Q8TF72 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.24■■□□□ 1.79
SHROOM3Q8TF72 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SHROOM3Q8TF72 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.24■■□□□ 1.79
SHROOM3Q8TF72 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.23■■□□□ 1.79
SHROOM3Q8TF72 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SHROOM3Q8TF72 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.22■■□□□ 1.79
SHROOM3Q8TF72 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.22■■□□□ 1.79
SHROOM3Q8TF72 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHROOM3Q8TF72 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHROOM3Q8TF72 AP004833.2-201ENST00000532228 1454 ntBASIC26.22■■□□□ 1.79
SHROOM3Q8TF72 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SHROOM3Q8TF72 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.22■■□□□ 1.79
SHROOM3Q8TF72 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHROOM3Q8TF72 DUX4L29-201ENST00000425409 679 ntBASIC26.22■■□□□ 1.79
SHROOM3Q8TF72 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.22■■□□□ 1.79
SHROOM3Q8TF72 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.21■■□□□ 1.79
SHROOM3Q8TF72 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SHROOM3Q8TF72 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SHROOM3Q8TF72 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SHROOM3Q8TF72 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
SHROOM3Q8TF72 RPS2-202ENST00000526522 924 ntTSL 2 BASIC26.2■■□□□ 1.79
SHROOM3Q8TF72 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SHROOM3Q8TF72 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.2■■□□□ 1.78
SHROOM3Q8TF72 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHROOM3Q8TF72 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.18■■□□□ 1.78
SHROOM3Q8TF72 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SHROOM3Q8TF72 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.18■■□□□ 1.78
SHROOM3Q8TF72 AC021231.2-201ENST00000594613 730 ntBASIC26.18■■□□□ 1.78
SHROOM3Q8TF72 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHROOM3Q8TF72 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
SHROOM3Q8TF72 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHROOM3Q8TF72 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC26.17■■□□□ 1.78
SHROOM3Q8TF72 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.17■■□□□ 1.78
SHROOM3Q8TF72 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.17■■□□□ 1.78
SHROOM3Q8TF72 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.16■■□□□ 1.78
SHROOM3Q8TF72 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SHROOM3Q8TF72 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHROOM3Q8TF72 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHROOM3Q8TF72 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHROOM3Q8TF72 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.16■■□□□ 1.78
SHROOM3Q8TF72 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.15■■□□□ 1.78
SHROOM3Q8TF72 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHROOM3Q8TF72 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.15■■□□□ 1.78
SHROOM3Q8TF72 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SHROOM3Q8TF72 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHROOM3Q8TF72 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SHROOM3Q8TF72 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
SHROOM3Q8TF72 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
SHROOM3Q8TF72 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
SHROOM3Q8TF72 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHROOM3Q8TF72 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHROOM3Q8TF72 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
SHROOM3Q8TF72 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
SHROOM3Q8TF72 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SHROOM3Q8TF72 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
SHROOM3Q8TF72 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SHROOM3Q8TF72 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
SHROOM3Q8TF72 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SHROOM3Q8TF72 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.1■■□□□ 1.77
SHROOM3Q8TF72 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SHROOM3Q8TF72 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms