Protein–RNA interactions for Protein: Q8TEJ3

SH3RF3, SH3 domain-containing RING finger protein 3, humanhuman

Predicted RBP Predictions only

Length 882 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF3Q8TEJ3 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SH3RF3Q8TEJ3 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
SH3RF3Q8TEJ3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC30.84■■■□□ 2.53
SH3RF3Q8TEJ3 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SH3RF3Q8TEJ3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.83■■■□□ 2.53
SH3RF3Q8TEJ3 ABHD17AP3-201ENST00000503096 1137 ntBASIC30.83■■■□□ 2.53
SH3RF3Q8TEJ3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.83■■■□□ 2.53
SH3RF3Q8TEJ3 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SH3RF3Q8TEJ3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
SH3RF3Q8TEJ3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.82■■■□□ 2.52
SH3RF3Q8TEJ3 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SH3RF3Q8TEJ3 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SH3RF3Q8TEJ3 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SH3RF3Q8TEJ3 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.8■■■□□ 2.52
SH3RF3Q8TEJ3 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.79■■■□□ 2.52
SH3RF3Q8TEJ3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SH3RF3Q8TEJ3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
SH3RF3Q8TEJ3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC30.79■■■□□ 2.52
SH3RF3Q8TEJ3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SH3RF3Q8TEJ3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SH3RF3Q8TEJ3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SH3RF3Q8TEJ3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SH3RF3Q8TEJ3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.78■■■□□ 2.52
SH3RF3Q8TEJ3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SH3RF3Q8TEJ3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SH3RF3Q8TEJ3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
SH3RF3Q8TEJ3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
SH3RF3Q8TEJ3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
SH3RF3Q8TEJ3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
SH3RF3Q8TEJ3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
SH3RF3Q8TEJ3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.77■■■□□ 2.52
SH3RF3Q8TEJ3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC30.77■■■□□ 2.52
SH3RF3Q8TEJ3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SH3RF3Q8TEJ3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
SH3RF3Q8TEJ3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC30.76■■■□□ 2.51
SH3RF3Q8TEJ3 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC30.76■■■□□ 2.51
SH3RF3Q8TEJ3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC30.75■■■□□ 2.51
SH3RF3Q8TEJ3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SH3RF3Q8TEJ3 AC110285.7-201ENST00000624417 1536 ntBASIC30.74■■■□□ 2.51
SH3RF3Q8TEJ3 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
SH3RF3Q8TEJ3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
SH3RF3Q8TEJ3 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
SH3RF3Q8TEJ3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SH3RF3Q8TEJ3 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
SH3RF3Q8TEJ3 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
SH3RF3Q8TEJ3 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.72■■■□□ 2.51
SH3RF3Q8TEJ3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.71■■■□□ 2.51
SH3RF3Q8TEJ3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC30.71■■■□□ 2.51
SH3RF3Q8TEJ3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SH3RF3Q8TEJ3 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SH3RF3Q8TEJ3 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SH3RF3Q8TEJ3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SH3RF3Q8TEJ3 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.69■■■□□ 2.5
SH3RF3Q8TEJ3 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SH3RF3Q8TEJ3 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC30.68■■■□□ 2.5
SH3RF3Q8TEJ3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SH3RF3Q8TEJ3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SH3RF3Q8TEJ3 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC30.67■■■□□ 2.5
SH3RF3Q8TEJ3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
SH3RF3Q8TEJ3 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.67■■■□□ 2.5
SH3RF3Q8TEJ3 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
SH3RF3Q8TEJ3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SH3RF3Q8TEJ3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SH3RF3Q8TEJ3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC30.66■■■□□ 2.5
SH3RF3Q8TEJ3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SH3RF3Q8TEJ3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
SH3RF3Q8TEJ3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC30.66■■■□□ 2.5
SH3RF3Q8TEJ3 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.65■■■□□ 2.5
SH3RF3Q8TEJ3 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.65■■■□□ 2.5
SH3RF3Q8TEJ3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
SH3RF3Q8TEJ3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SH3RF3Q8TEJ3 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SH3RF3Q8TEJ3 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC30.64■■■□□ 2.5
SH3RF3Q8TEJ3 AC008813.1-201ENST00000536597 885 ntBASIC30.64■■■□□ 2.5
SH3RF3Q8TEJ3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC30.64■■■□□ 2.5
SH3RF3Q8TEJ3 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.49
SH3RF3Q8TEJ3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SH3RF3Q8TEJ3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SH3RF3Q8TEJ3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SH3RF3Q8TEJ3 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SH3RF3Q8TEJ3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
SH3RF3Q8TEJ3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC30.62■■■□□ 2.49
SH3RF3Q8TEJ3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
SH3RF3Q8TEJ3 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
SH3RF3Q8TEJ3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
SH3RF3Q8TEJ3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SH3RF3Q8TEJ3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC30.61■■■□□ 2.49
SH3RF3Q8TEJ3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC30.61■■■□□ 2.49
SH3RF3Q8TEJ3 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC30.61■■■□□ 2.49
SH3RF3Q8TEJ3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SH3RF3Q8TEJ3 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SH3RF3Q8TEJ3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
SH3RF3Q8TEJ3 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SH3RF3Q8TEJ3 PEX7-203ENST00000541292 945 ntTSL 5 BASIC30.6■■■□□ 2.49
SH3RF3Q8TEJ3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC30.6■■■□□ 2.49
SH3RF3Q8TEJ3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.59■■■□□ 2.49
SH3RF3Q8TEJ3 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
SH3RF3Q8TEJ3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.57■■■□□ 2.48
SH3RF3Q8TEJ3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.57■■■□□ 2.48
SH3RF3Q8TEJ3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms